Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021951
         (575 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36390.1 68415.m04466 1,4-alpha-glucan branching enzyme / sta...    29   2.9  
At4g30260.1 68417.m04302 integral membrane Yip1 family protein c...    28   3.9  
At1g74490.1 68414.m08629 protein kinase, putative similar to pro...    27   6.8  
At1g56080.1 68414.m06439 expressed protein                             27   6.8  
At1g24190.1 68414.m03051 paired amphipathic helix repeat-contain...    27   9.0  

>At2g36390.1 68415.m04466 1,4-alpha-glucan branching enzyme / starch
           branching enzyme class II (SBE2-1) nearly identical to
           starch branching enzyme class II [Arabidopsis thaliana]
           GI:619939
          Length = 858

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 384 LEGRFPFDVIKKLTATGLMGACVDEEYGGKGLDY-LTLAVAWK 509
           + G +P  ++     +G+   CV  E GG G DY L +AVA K
Sbjct: 529 IHGLYPEAIVVGEDVSGMPAFCVPVEDGGVGFDYRLHMAVADK 571


>At4g30260.1 68417.m04302 integral membrane Yip1 family protein
           contains Pfam domain, PF04893: Yip1 domain
          Length = 280

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 475 PLPPYSSSTQAPIRPVAVSFFITSKGNRPSKS 380
           PLPP SSS+   + PV     + S GN  +KS
Sbjct: 62  PLPPSSSSSTQKVMPVPAPPPLPSAGNEGNKS 93


>At1g74490.1 68414.m08629 protein kinase, putative similar to
           protein kinase [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695; contains Pfam profile: PF00069
           Eukaryotic protein kinase domain
          Length = 399

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 20/77 (25%), Positives = 34/77 (44%)
 Frame = -3

Query: 552 EWIRSCQYCAARDSFSTRRPVSSSLDPCHRILXXXXRPSGLWLSAFLSHQKGTVLPSHVR 373
           EW+R   Y       +  + +  SL+  HR+L     P+G  L   L  +  +VL     
Sbjct: 135 EWLREVNYLGRLHHPNLVKLIGYSLENEHRLLVYEHLPNGS-LENHLFERSSSVLS---W 190

Query: 372 CVRLQVFVGEFLGQCLI 322
            +R++V +G   G C +
Sbjct: 191 SLRMKVAIGAARGLCFL 207


>At1g56080.1 68414.m06439 expressed protein
          Length = 310

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +3

Query: 321 ISSIVQGIRRQILEAERSEHDLEGR 395
           + S V G+R+++LE +R  H+LE R
Sbjct: 44  LESQVSGLRQKLLEKDRLVHELEDR 68


>At1g24190.1 68414.m03051 paired amphipathic helix repeat-containing
           protein similar to transcription co-repressor Sin3
           [Xenopus laevis] GI:4960210; contains Pfam profile
           PF02671: Paired amphipathic helix repeat
          Length = 1353

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = +3

Query: 279 MQKLHESADGTTKRISSIVQGIRRQILEAERSEHDLEGRFPFDVIKKLTATGLMGACVDE 458
           +  L ES + TTK +  ++  I         + ++L+   P  V   LTA  L   C++ 
Sbjct: 518 LDMLLESVNSTTKHVEELLTKI---------NSNELKTNSPIRVEDHLTALNLR--CIER 566

Query: 459 EYGGKGLDYL 488
            YG  GLD +
Sbjct: 567 LYGDHGLDVM 576


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,225,413
Number of Sequences: 28952
Number of extensions: 214319
Number of successful extensions: 587
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)