Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021950X
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    27   2.4  
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces...    27   2.4  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.1  
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    25   7.2  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    25   7.2  
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa...    25   9.5  
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    25   9.5  

>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = -1

Query: 375 PNNFCFDDTSDIKLKKLVMVQSKYG*NVSLRTVPFVVKF*VKSHITSLECITIFFSFSSA 196
           P N C D   D+K    V++++ Y  N+ L   P ++   V + I S  C T+F  F  A
Sbjct: 481 PRNICIDSIEDVK----VLIRA-YRENLGLHHTPLII---VYACIVS--CSTVFMLFDGA 530


>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 366

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 462 RGSSAAWKCSILTPAPRCNTFSVMPM 385
           RG +  W  S+ +  P C+TF + P+
Sbjct: 213 RGFAIPWYTSVCSKLPNCDTFLLRPL 238


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/66 (19%), Positives = 28/66 (42%)
 Frame = +2

Query: 320 MTSFFNLMSEVSSKQKLLGP*LIGMTEKVLHLGAGVKMEHFQAALDPRKQERLEARFLGG 499
           + S  ++ S +    +L+ P L G+  +++   +G+     +        E +   F GG
Sbjct: 403 LKSLLSISSHLPKTLQLMEPLLDGILSQLVPKSSGIDSNSQKLLTSSTSNEYIHGEFFGG 462

Query: 500 KVTQRT 517
              +RT
Sbjct: 463 NEMERT 468


>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 204

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 146 IGKH*QFKYISSPFSYSADEKLKKIVIHSSEVICDF 253
           + K+ +  Y  S F +   EKLK++ +   E IC F
Sbjct: 56  VKKNMEALYRQSSFGWDDSEKLKEMEMEKLEYICIF 91


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 18/45 (40%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
 Frame = -1

Query: 492 KNRASR----RSCLRGSSAAWKCSILTPAPRCNTFSVMPMSYGPN 370
           KNRA +    RSCLR      KC    P  RC   S    +YG N
Sbjct: 6   KNRAHKNIRARSCLRCRRRKVKCDRQYPCSRCKE-SEESCTYGVN 49


>SPBC21C3.18 |spo4||serine/threonine protein kinase
           Spo4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 514 PLCDFAA*ESCFETLLLARIQRRLEVLH 431
           P   F A +  + T+L +RIQ  LE+LH
Sbjct: 87  PKNHFVALKRIYATVLPSRIQTELEMLH 114


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/50 (26%), Positives = 20/50 (40%)
 Frame = +2

Query: 218 IVIHSSEVICDFT*NLTTNGTVLKETFHPYFDCTMTSFFNLMSEVSSKQK 367
           ++IH  +    F+ N   NG       H YF+     FF L   + S  +
Sbjct: 238 VLIHDGKY---FSNNAVVNGAAHHAAHHMYFNYNYGQFFTLFDRLCSSYR 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,330,163
Number of Sequences: 5004
Number of extensions: 48437
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)