Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021950X
         (543 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1227 + 9912646-9913056,9913306-9913413,9913517-9913672,991...    28   4.2  
08_02_0986 + 23328056-23328145,23328289-23329227,23329313-233295...    27   9.7  
07_03_0167 - 14649782-14649864,14649954-14650078,14650357-146504...    27   9.7  

>01_01_1227 +
           9912646-9913056,9913306-9913413,9913517-9913672,
           9914110-9914325,9914436-9914645,9914722-9914859,
           9915076-9915177,9915508-9915603
          Length = 478

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -1

Query: 219 IFFSFSSAEYENGDEIYLNCQCFPISHEFSLNYKIVGLYYKNYY 88
           +F  FS+    N D + ++    P+S EF  N + VGL   +++
Sbjct: 123 VFLCFSAFLLCNMDRVNMSIAILPMSAEFGWNPQTVGLIQSSFF 166


>08_02_0986 +
           23328056-23328145,23328289-23329227,23329313-23329570,
           23330384-23330692
          Length = 531

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = +1

Query: 337 FDVRGIIETEIIRPITHRHDGKGVAPGC--WRQD 432
           F  +GI++  +   +   HDG G APG   W  D
Sbjct: 269 FTTKGILQAAVQGELWRLHDGNGKAPGLMGWMPD 302


>07_03_0167 -
           14649782-14649864,14649954-14650078,14650357-14650400,
           14650873-14651003,14652469-14652559,14653335-14653445,
           14653623-14653774,14653863-14654067,14654436-14654764,
           14654850-14655309
          Length = 576

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -1

Query: 435 SILTPAPRCNTFSVMPMSYGPNNFCFDDTSDIKL 334
           ++L P P C         Y P +FCF D   IKL
Sbjct: 191 NVLKPEPDCKHCGAKRFQYEPPSFCFRD-GKIKL 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,381,885
Number of Sequences: 37544
Number of extensions: 289656
Number of successful extensions: 743
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)