Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021950X
         (543 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18912| Best HMM Match : UCH (HMM E-Value=5.3e-06)                   30   1.4  
SB_8863| Best HMM Match : DAO (HMM E-Value=0.04)                       28   4.3  
SB_7422| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)                 28   4.3  
SB_27135| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)                 27   7.5  
SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)                27   9.9  
SB_13705| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_18912| Best HMM Match : UCH (HMM E-Value=5.3e-06)
          Length = 781

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 147 ISHEFSLNYKIVGLYYKNYYSPNITTDQNKEKLNVN 40
           ISH+FS   +++ L+ K Y    +T  Q K++ N+N
Sbjct: 738 ISHKFSRLPRVLILHLKRYNFDKVTDQQEKKQNNIN 773


>SB_8863| Best HMM Match : DAO (HMM E-Value=0.04)
          Length = 485

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +2

Query: 314 CTMTSFFNLMSEVSSKQK--LLGP*LIGMTEKVLHLGAGVKMEHFQAALDPRKQERLEAR 487
           C   +  NL  +  S+++  ++G  L+G    V     G K++ +++  DPRK + +  R
Sbjct: 148 CCKNNMANLSEDEKSRREVAIVGGGLVGALSAVFFAKRGYKVDLYESRQDPRKLQFVSLR 207


>SB_7422| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)
          Length = 136

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 522 YWVRCVTLPPKNRASRRSCLRGSSAAWKCSILTPAPR 412
           Y V CV LP   R  R SC++ S   ++ S + P+PR
Sbjct: 74  YRVSCV-LPSPRRFYRVSCVQPSPRFYRVSCVQPSPR 109


>SB_27135| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 222

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 528 VYYWVRCVTLPPKNRASRRSCLRGSSAAW 442
           +YY VRCV  P  +   +R  LR S   W
Sbjct: 104 IYYKVRCVMFPLPSLGFKRDVLRDSPDFW 132


>SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)
          Length = 1399

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 322  DKFLQFDVRGIIETEIIRPITHRHDGKGVAP 414
            D+  +FDV G + +  +RP+ + H GK   P
Sbjct: 1200 DRAKRFDVDGKVVSSTLRPMPNLHQGKLATP 1230


>SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)
          Length = 245

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
 Frame = -1

Query: 540 STMSVYYWVRCVTL---PPKNRASRRSCLRGSSAAWKCSI-LTPAPRCNTFSVMPMSYGP 373
           +T S  Y +   T+   P  +  + +    GSS     +I   P  RC T S   +S GP
Sbjct: 75  ATSSGSYIISSTTIGVCPTNSCTNLKDSTSGSSTISSATICFGPTNRCTTTSSTTISVGP 134

Query: 372 NNFC 361
            N C
Sbjct: 135 TNSC 138


>SB_13705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 781

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = -1

Query: 438 CSILTPAPRCNTFSVMPMSYGPNNFCFDDTSDIKLKKLVMVQ-SKYG*NVSLRTVP 274
           C  L+ +PR N+FS  P S+       D  SD  L        S  G N S   VP
Sbjct: 665 CDSLSGSPRLNSFSFTPFSFKGLASALDSESDSDLSDSRSTSGSDQGFNFSGEIVP 720


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,938,984
Number of Sequences: 59808
Number of extensions: 339964
Number of successful extensions: 825
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)