Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021950X
         (543 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068709-4|AAC19253.2|  297|Caenorhabditis elegans Serpentine re...    29   1.6  
Z92786-10|CAB07212.3|  984|Caenorhabditis elegans Hypothetical p...    27   6.6  
Z70211-3|CAA94156.1|  363|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AL132877-15|CAC70111.1|  628|Caenorhabditis elegans Hypothetical...    27   6.6  
AL021473-3|CAA16306.3|  984|Caenorhabditis elegans Hypothetical ...    27   6.6  
AL021473-1|CAA16305.1|  570|Caenorhabditis elegans Hypothetical ...    27   6.6  
U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type  chlo...    27   8.7  
AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type chlo...    27   8.7  

>AF068709-4|AAC19253.2|  297|Caenorhabditis elegans Serpentine
           receptor, class t protein26 protein.
          Length = 297

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 3   FTNFFLLSVFIFCSHSIFLYF 65
           FT F  +   +FC+H +F+YF
Sbjct: 70  FTGFLAIEGAVFCTHPVFIYF 90


>Z92786-10|CAB07212.3|  984|Caenorhabditis elegans Hypothetical
           protein Y20C6A.1 protein.
          Length = 984

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -1

Query: 255 VKSHITSLECITIFFSFSSAEYENGDEIYLNCQCFPISHEFSLNYKI 115
           + +   ++E   +F      EY+NG+E+Y     FP  HE   +Y +
Sbjct: 565 ISNDTNNVEPHEVFGETEHVEYKNGEELYRKIWYFP--HEVHTSYDL 609


>Z70211-3|CAA94156.1|  363|Caenorhabditis elegans Hypothetical
           protein K11E4.3 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -3

Query: 181 RRNIFKLSVFSYFPRIFFKLQ-NCRPLLQKLLFTKYHNRPK*RKIECEQNINTESRKKF 8
           RR  F  ++  Y   + F  + NC+P +  L + K       + +   ++INT+    F
Sbjct: 38  RRGFFLKNIMFYLLNLKFATKKNCKPKINNLKYMKLKEEQNTKSLPNSKDINTDQTHLF 96


>AL132877-15|CAC70111.1|  628|Caenorhabditis elegans Hypothetical
           protein Y105E8B.9 protein.
          Length = 628

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 381 YGPNNFCFDDTSDIKLKKLVMVQSKYG*NVSLRTVPFV 268
           YGP NF  D T+D  L   + V   YG  + +  +P++
Sbjct: 470 YGPTNFDNDQTAD--LMDFICVNRYYGWYIDMGYIPWI 505


>AL021473-3|CAA16306.3|  984|Caenorhabditis elegans Hypothetical
           protein Y20C6A.1 protein.
          Length = 984

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -1

Query: 255 VKSHITSLECITIFFSFSSAEYENGDEIYLNCQCFPISHEFSLNYKI 115
           + +   ++E   +F      EY+NG+E+Y     FP  HE   +Y +
Sbjct: 565 ISNDTNNVEPHEVFGETEHVEYKNGEELYRKIWYFP--HEVHTSYDL 609


>AL021473-1|CAA16305.1|  570|Caenorhabditis elegans Hypothetical
           protein Y20C6A.2 protein.
          Length = 570

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 18/89 (20%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
 Frame = -1

Query: 360 FDDTSDIKLKKLVMVQSK-YG*NVSLRTVPFVVKF*VKSHITSLECITIFFSFSSAEYEN 184
           F  +    L  L+++++K +  ++    +   +KF +K  I  L+C+ ++    +++ +N
Sbjct: 180 FHSSKKCTLNDLLVMEAKDFVSSIDFEELNLFLKFWIKGFIQHLKCVELYVESDTSDLQN 239

Query: 183 GDEIYLNCQCFPISHEFSLNYKIVGLYYK 97
              ++ N     IS+E + N K+    Y+
Sbjct: 240 IAILFKN-----ISYEEAPNDKVFEYKYR 263


>U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type  chloride
            channel protein3, isoform a protein.
          Length = 1001

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 291  SLRTVPFVVKF*VKSHITSLECITIFFS-FSSAEYENG 181
            ++RT P    F V S  TS  C++I FS   +A  ENG
Sbjct: 922  NVRTTPESPHFEVSSPSTSSSCVSIDFSPLDAANSENG 959


>AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type chloride
            channel CLH-3b protein.
          Length = 1001

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 291  SLRTVPFVVKF*VKSHITSLECITIFFS-FSSAEYENG 181
            ++RT P    F V S  TS  C++I FS   +A  ENG
Sbjct: 922  NVRTTPESPHFEVSSPSTSSSCVSIDFSPLDAANSENG 959


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,037,477
Number of Sequences: 27780
Number of extensions: 278167
Number of successful extensions: 839
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)