Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021950X
         (543 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    26   0.22 
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    26   0.22 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   6.1  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   8.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.1  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   8.1  

>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 252 KSHITSLECITIFFSFSSAEYENGDEIYL 166
           K  +TS E   + + F    YEN  E+YL
Sbjct: 116 KKEVTSTEGCEVAWQFGKCIYENDKELYL 144


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 252 KSHITSLECITIFFSFSSAEYENGDEIYL 166
           K  +TS E   + + F    YEN  E+YL
Sbjct: 90  KKEVTSTEGCEVAWQFGKCIYENDKELYL 118


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis
          mellifera ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +3

Query: 12 FFLLSVFIFCSHSIF 56
          +FLLS F+F ++++F
Sbjct: 50 YFLLSAFLFGANALF 64


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 259 KFDHKWDCS*GDISSIF*LYHDKFLQFDV 345
           KFD  W    G I++I  +   K L FD+
Sbjct: 135 KFDRLWVLDSGLINNIQLMCSPKLLAFDL 163


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 475 TLLLARIQRRLEVLHLDASTQVQHL 401
           TLL   IQR+ ++  LD S + + L
Sbjct: 452 TLLDESIQRKSDITELDVSKRCKDL 476


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 475 TLLLARIQRRLEVLHLDASTQVQHL 401
           TLL   IQR+ ++  LD S + + L
Sbjct: 158 TLLDESIQRKSDITELDVSKRCKDL 182


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,914
Number of Sequences: 438
Number of extensions: 3719
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)