Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021950X
         (543 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10380.1 68417.m01703 major intrinsic family protein / MIP fa...    29   2.7  
At1g66180.1 68414.m07512 aspartyl protease family protein contai...    29   2.7  
At3g12540.1 68416.m01560 expressed protein contains Pfam profile...    28   4.6  
At2g02300.1 68415.m00168 F-box family protein / SKP1 interacting...    28   4.6  
At4g09570.1 68417.m01575 calcium-dependent protein kinase, putat...    27   6.1  
At5g03360.1 68418.m00289 DC1 domain-containing protein contains ...    27   8.1  

>At4g10380.1 68417.m01703 major intrinsic family protein / MIP
           family protein contains Pfam profile: MIP PF00230
          Length = 304

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 423 PAPRCNTFSVMPMSYGPNNFCFDD--TSDIKLKK 328
           P PRC    VM  ++G ++ CF D  + D+ L +
Sbjct: 45  PTPRCKCLPVMGSTWGQHDTCFTDFPSPDVSLTR 78


>At1g66180.1 68414.m07512 aspartyl protease family protein contains
           Pfam PF00026: Eukaryotic aspartyl protease profile;
           similar to CND41, chloroplast nucleoid DNA binding
           protein (GI:2541876) [Nicotiana tabacum]
          Length = 430

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = -1

Query: 537 TMSVYYWVRC--VTLPPKNRASRRSCLRGSSAAWKCSILTPAPRCNTFSVMPMSYGPNNF 364
           T S   W++C    LPPK + S    L  S +   CS     PR   F+ +P S   N  
Sbjct: 91  TGSQLSWIQCHRKKLPPKPKTSFDPSLSSSFSTLPCSHPLCKPRIPDFT-LPTSCDSNRL 149

Query: 363 C 361
           C
Sbjct: 150 C 150


>At3g12540.1 68416.m01560 expressed protein contains Pfam profile
           PF04784: Protein of unknown function, DUF547
          Length = 503

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 20/50 (40%), Positives = 24/50 (48%)
 Frame = -1

Query: 459 GSSAAWKCSILTPAPRCNTFSVMPMSYGPNNFCFDDTSDIKLKKLVMVQS 310
           GS   W CS L PA RC       M  G N       S+ +LKKL+ V+S
Sbjct: 449 GSLIEWICSQLPPAQRCFQLKETAME-GLNK-----KSESQLKKLIEVRS 492


>At2g02300.1 68415.m00168 F-box family protein / SKP1 interacting
           partner 3-related contains similarity to SKP1
           interacting partner 3 GI:10716951 from [Arabidopsis
           thaliana]
          Length = 284

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 337 FDVRGIIETEIIRPITH 387
           FD+RG++ T II P TH
Sbjct: 168 FDIRGVLNTRIISPGTH 184


>At4g09570.1 68417.m01575 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase [Arabidopsis thaliana] gi|604881|dbj|BAA04830;
           contains protein kinase domain, Pfam:PF00069; contains
           EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
           INTERPRO:IPR002048
          Length = 501

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -1

Query: 435 SILTPAPRCNTFSVMPMSYGPNNFCFDDTS-DIKLK 331
           +IL     C++  VM     P NF FD  S D KLK
Sbjct: 132 TILGVVEACHSLGVMHRDLKPENFLFDSPSDDAKLK 167


>At5g03360.1 68418.m00289 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 1610

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -3

Query: 538 HDEC-LLLGPLCDFAA*ESCFETLLLARIQR 449
           H  C   + P CDF A +SCF    + RI R
Sbjct: 299 HTRCPFYICPPCDFVAHQSCFSLPRVIRISR 329


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,933,728
Number of Sequences: 28952
Number of extensions: 245339
Number of successful extensions: 613
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)