Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021948
         (589 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    23   2.5  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    23   2.5  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   4.4  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   4.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   4.4  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   5.8  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   7.7  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           21   7.7  

>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 58  PPRCHNGSPSGNRHQQFPSQASTLP 132
           P    + SPSG+  Q   S AST P
Sbjct: 32  PAAYSSSSPSGSSPQHSSSSASTSP 56


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 58  PPRCHNGSPSGNRHQQFPSQASTLP 132
           P    + SPSG+  Q   S AST P
Sbjct: 32  PAAYSSSSPSGSSPQHSSSSASTSP 56


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 19  WLLRLAWLSRQHHPPRC 69
           WLL  AW+S     P C
Sbjct: 224 WLLSQAWISVHIWSPNC 240


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 19  WLLRLAWLSRQHHPPRC 69
           WLL  AW+S     P C
Sbjct: 457 WLLSQAWISVHIWSPNC 473


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 19  WLLRLAWLSRQHHPPRC 69
           WLL  AW+S     P C
Sbjct: 457 WLLSQAWISVHIWSPNC 473


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 46  RQHHPPRCHNGSPSGNRHQQ 105
           RQ  PP  + G PSG +  Q
Sbjct: 57  RQGIPPHHYGGPPSGGQPPQ 76


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 281 FQAHVNRHQQFPSQASTLPISGKFQAH 361
           F  H+     FP  A +LP   K+ A+
Sbjct: 242 FHWHITDSHSFPFTAESLPDLTKYGAY 268


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/21 (33%), Positives = 9/21 (42%)
 Frame = -3

Query: 116 CDGNC*WRFPLGEPLWHLGGW 54
           C G   W  P  E  ++  GW
Sbjct: 211 CSGTIDWALPKQEDCFYQEGW 231


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,579
Number of Sequences: 336
Number of extensions: 2903
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14726181
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)