Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021948
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      27   1.5  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    25   6.2  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   8.2  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    25   8.2  

>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +2

Query: 275 GKFQAHVNRHQQFPSQASTLPISGKFQAHDINNQQSQLVPGFCA 406
           GKF  H++ H+QF  +        + QA  INN        FCA
Sbjct: 302 GKFYCHLDYHEQFSPRCKHCKTPIEDQAVHINNDWFHENHHFCA 345


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 430 TKLVKAMLSAEARDKLTLLVVY 365
           TKL K+MLS+E R K  L  +Y
Sbjct: 164 TKLTKSMLSSEKRSKNHLSKIY 185



 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 225 TKLVKAMLSAEARDKLTLLVVY 160
           TKL K+MLS+E R K  L  +Y
Sbjct: 164 TKLTKSMLSSEKRSKNHLSKIY 185


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 212 FTNLVVYISAISVTTSTLPISGKFQAHVNRHQQFPSQASTL 334
           +T+  V I+A +  +STLP+S   +A V+     P+  STL
Sbjct: 229 YTSSSVDIAASTTASSTLPVSTS-EATVSFSTDIPATPSTL 268


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
 Frame = +2

Query: 212 FTNLVVYISAISVTTS-------TLPISGKFQAHVNRHQQFPSQAST 331
           F+N  VY + I++T S       TL IS +   H N     PSQ +T
Sbjct: 64  FSNASVYTTLITITNSQCTGNYSTLTISSQPLIHTNTSISKPSQTAT 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,292,719
Number of Sequences: 5004
Number of extensions: 44969
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)