Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021948
         (589 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0523 + 34499533-34499705,34499808-34499917,34500037-345002...    28   4.8  
10_01_0245 + 2566400-2567584                                           28   6.3  
04_01_0623 - 8198301-8198504,8198805-8198907,8199065-8199144,819...    27   8.4  
03_05_0479 - 24732809-24733015                                         27   8.4  

>03_06_0523 +
           34499533-34499705,34499808-34499917,34500037-34500224,
           34500984-34501451
          Length = 312

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 46  RQHHPPRCHNGSPSGNRHQQFPSQA 120
           R H PP  H   PS    Q+FP +A
Sbjct: 178 RHHEPPMSHKKFPSSAGEQRFPDRA 202


>10_01_0245 + 2566400-2567584
          Length = 394

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 208 HAKRRSQGQADSVGCLCHELGIYLIWV 128
           HA     G   S+GC C ++G +L W+
Sbjct: 208 HAAETPVGNCISLGCRCIQIGDFLYWM 234


>04_01_0623 -
           8198301-8198504,8198805-8198907,8199065-8199144,
           8199239-8199321,8199593-8199641,8199736-8199801,
           8200118-8200167,8200299-8200423,8200568-8200683
          Length = 291

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = +1

Query: 4   KSACPWLLRLAWLSRQHHPPRCHNGSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQL 183
           KS  P +LRLAW     +      G P+G+   +FP + S    +G   A D+     Q 
Sbjct: 29  KSCAPIMLRLAWHDAGTYDKATKTGGPNGS--IRFPQEYSHAANAGIKIAIDLLEPMKQK 86

Query: 184 VP 189
            P
Sbjct: 87  HP 88


>03_05_0479 - 24732809-24733015
          Length = 68

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 338 WVKLKLVTEIADGGLHELGIYLIW 267
           W KL  + ++  GGLH L + ++W
Sbjct: 38  WEKLANMADVLKGGLHTLILLIVW 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,746,807
Number of Sequences: 37544
Number of extensions: 319183
Number of successful extensions: 722
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)