Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021948
         (589 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.6  
SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)             28   4.9  
SB_43849| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1646

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
 Frame = +1

Query: 61   PRCHNGSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQLVPGFCA*HGF-HQFSRLYL 237
            PR      SG+      S    +P SGK Q  D  N+Q     GF +   F +  +    
Sbjct: 1198 PRGEGEEKSGSSGSSMESSPQGMPASGKTQITDNPNKQPGFPGGFSSASQFPYSIASSPW 1257

Query: 238  SNFRHNFNFTHIR*IPSSCKPPSAISVTS 324
             N     +    +  PSS +PP  ++ ++
Sbjct: 1258 QNTEPTDSLNKTQANPSSIRPPPGLNTST 1286


>SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 58  PPRCHNGSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQL 183
           P  CHNG+P+G   Q   S+ S  P++   +       Q++L
Sbjct: 52  PSICHNGNPAGANSQTNQSELSRQPVTSLSRKSISQTNQTEL 93


>SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)
          Length = 1496

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -2

Query: 288 AWNLPDMGKVEVVTEIAEI*TTKLVKAMLSAEARDKLTLLVVYVMS 151
           AWN  D+ K ++ TE  +  T  L  AML+A   DK     +++ +
Sbjct: 169 AWNRIDLAKSDIFTEEQQWTTETLSAAMLTALLDDKAEFAELFLQN 214


>SB_43849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 771

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 248 VTTSTLPISGKFQAHVNRHQQFPSQASTLPISGKFQAHDINNQQSQLVP 394
           +++  LPI G +    +R   FPS    LPI G    H +++  S  +P
Sbjct: 413 ISSGCLPIIG-YPTSYHRVSHFPSSGIPLPIIGLSSHHRVSHFLSSGIP 460


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,187,199
Number of Sequences: 59808
Number of extensions: 327753
Number of successful extensions: 629
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)