Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021948
         (589 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    23   1.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   3.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.0  

>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -1

Query: 196 RSQGQADSVGCLCHELGIYLIWVK 125
           ++ G  + VGC+C +     +W K
Sbjct: 69  KAGGHCEKVGCICRKTSFKDLWDK 92



 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -3

Query: 401 RSQGQADFVGCLCHELGIYLIWVK 330
           ++ G  + VGC+C +     +W K
Sbjct: 69  KAGGHCEKVGCICRKTSFKDLWDK 92


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +1

Query: 76  GSPSGNRHQQFPSQASTLPISGKFQAHDINNQ 171
           G P G    Q PSQ    P SG  Q   +  Q
Sbjct: 49  GGPPGAPPSQNPSQMMISPASGIHQMQQLLQQ 80


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = -2

Query: 246 EIAEI*TTKLVKAMLSAEARDKLTL 172
           +++++ T  L+KA+L+ +A+D   L
Sbjct: 42  DLSDVHTGILIKALLTVQAKDSNVL 66


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 49  QHHPPRCHNGSPSGNRHQ 102
           QHHP + H    S   HQ
Sbjct: 320 QHHPSQYHPHRGSSPHHQ 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,548
Number of Sequences: 438
Number of extensions: 3110
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)