Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021948
         (589 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79000.1 68414.m09212 p300/CBP acetyltransferase-related prot...    28   5.3  
At2g46050.1 68415.m05728 pentatricopeptide (PPR) repeat-containi...    27   7.0  
At4g31160.1 68417.m04423 transducin family protein / WD-40 repea...    27   9.3  
At1g67035.1 68414.m07623 expressed protein ; expression supporte...    27   9.3  

>At1g79000.1 68414.m09212 p300/CBP acetyltransferase-related protein
           2 (PCAT2) contains Pfam domains PF02135: TAZ zinc finger
           and PF00569: Zinc finger, ZZ type; identical to cDNA
           p300/CBP acetyltransferase-related protein 2
           GI:12597460
          Length = 1691

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
 Frame = +2

Query: 239 AISVTTSTLPISGK-FQAHVNRHQQFPSQASTLPISGKFQAHDINNQQSQLVPGFCA*HG 415
           A+S T+S+L    + FQ   NR QQ P+Q        +F       QQSQ    F +   
Sbjct: 382 AVSRTSSSLSHQQQQFQQQPNRFQQQPNQFHQQ--QQQFLHQQQLKQQSQQQQRFISHDA 439

Query: 416 FHQFXXXXXXXXXXXXXNG--SPSGNRHQQFPSKLQLYXYQ 532
           F Q               G  +PS + H Q P + QL  +Q
Sbjct: 440 FGQNNVASDMVTHVKHEPGMENPSESIHSQTPEQFQLSQFQ 480


>At2g46050.1 68415.m05728 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 590

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 211 FHQFSRLYLSNFR-HNFNFTHIR*IPSSCKPPSAISVTS 324
           F + +R++L+N + H  +  +IR IPSS   P AIS  S
Sbjct: 5   FLRSTRIFLANHQNHLSSLQNIRTIPSSSSSPVAISSVS 43


>At4g31160.1 68417.m04423 transducin family protein / WD-40 repeat
           family protein contains 2 WD-40 repeats (PF00400);
           KIAA0800 protein, Homo sapiens GI:3882321 EMBL:AB018343
          Length = 1846

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 58  PPRCHNGSPSGNRHQQFPSQASTLP 132
           PP   N  P    HQ  P QA+T P
Sbjct: 877 PPSLSNKPPLAQNHQPVPGQATTRP 901


>At1g67035.1 68414.m07623 expressed protein ; expression supported
           by MPSS
          Length = 229

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 127 KLKLVTEIADGGFH*GSRYG 68
           KLKL+ +  D GF  GSRYG
Sbjct: 26  KLKLLVDNGDYGFERGSRYG 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,293,741
Number of Sequences: 28952
Number of extensions: 246135
Number of successful extensions: 538
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)