Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021947
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    26   6.3  
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    25   8.4  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    25   8.4  

>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -2

Query: 466 GTIRRQLNQVCPPCG*SAARTLTFYSSLNH 377
           GT+R   NQVC  CG    R       +NH
Sbjct: 301 GTLRDDENQVCQNCGNVGHRRFDCPERINH 330


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 278 GYSCTIIILIVEPVEVSVHLFFYLLLRWVDELTAHLVLSG 159
           G   T I L+++P+      F Y+     D L+A L LSG
Sbjct: 115 GEGVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSG 154


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 454 RQLNQVCPPCG*SAARTLTFYSSLNH 377
           R LN + PP G +A +T++ Y  LNH
Sbjct: 322 RSLNLLPPPNG-NAHKTMSLYGLLNH 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,922,733
Number of Sequences: 5004
Number of extensions: 54484
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)