Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021947
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20385| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.24 
SB_51198| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_58388| Best HMM Match : Lipocalin (HMM E-Value=7.4)                 29   2.9  
SB_9819| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.1  
SB_22340| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_20385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 603

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +3

Query: 396 KVNVLAADHPQGGQTWLSCLRIVPLLSVHVPPQIEKD 506
           +VNVL   HP G ++  S  R VPL S   P  IE D
Sbjct: 280 QVNVLQPSHPSGSKSARSSARNVPLTSEDQPENIEDD 316


>SB_51198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1627

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -2

Query: 460 IRRQLNQVCPPCG*SAARTLTFYSSLNH*TFQ*PFITNDVCDLGTYNN 317
           IR +LN     CG   AR +T+Y    H      ++T+D  DL T ++
Sbjct: 679 IRAELNSYVVECGTDGARVVTWYHRQFHEVATKRYLTSDDMDLKTVHS 726


>SB_58388| Best HMM Match : Lipocalin (HMM E-Value=7.4)
          Length = 246

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 155 CNHLTPGGLLARPPI*AINKKK 220
           C+H T GGLL +P I A  +KK
Sbjct: 198 CHHFTSGGLLKKPYIEAFTRKK 219


>SB_9819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +2

Query: 353 NERSLERLVVQGRVEGQRSRGRSPTRW--TDLVKLSTN-CSLTECTRTATNRERWE 511
           ++R + ++ ++    G+R  GR  T W  T L +LS +  +L E    A +R +W+
Sbjct: 2   DQRRISKVALRWTPPGRRKPGRPKTTWRRTILSELSKHQLTLAEAQHMARDRRKWK 57


>SB_22340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +2

Query: 353 NERSLERLVVQGRVEGQRSRGRSPTRW--TDLVKLSTN-CSLTECTRTATNRERWE 511
           ++R + ++ ++    G+R  GR  T W  T L +LS +  +L E    A +R +W+
Sbjct: 57  DQRRIPKVALRWTPPGRRKPGRPKTTWRRTILSELSGHQLTLAEAQHMARDRRKWK 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,589,909
Number of Sequences: 59808
Number of extensions: 440528
Number of successful extensions: 940
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)