Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021947
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    27   0.24 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    27   0.24 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    27   0.24 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    25   0.55 
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   6.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.0  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = +2

Query: 401 QRSRGRSPTRWT---DLVKLSTNCSLTECTRTATNRERWEVSQKPQPN 535
           Q+  G  PT  T   + +   TNC    CT T TN    E+ +K  P+
Sbjct: 407 QKREGGPPTGATTGPNEIVTCTNCGPNPCTHTTTNGCTAELRKKEPPH 454


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = +2

Query: 401 QRSRGRSPTRWT---DLVKLSTNCSLTECTRTATNRERWEVSQKPQPN 535
           Q+  G  PT  T   + +   TNC    CT T TN    E+ +K  P+
Sbjct: 427 QKREGGPPTGATTGPNEIVTCTNCGPNPCTHTTTNGCTAELRKKEPPH 474


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = +2

Query: 401 QRSRGRSPTRWT---DLVKLSTNCSLTECTRTATNRERWEVSQKPQPN 535
           Q+  G  PT  T   + +   TNC    CT T TN    E+ +K  P+
Sbjct: 376 QKREGGPPTGATTGPNEIVTCTNCGPNPCTHTTTNGCTAELRKKEPPH 423


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 455 TNCSLTECTRTATNRERWEVSQKPQPN 535
           TNC    CT T TN    E+ +K  P+
Sbjct: 414 TNCGPNPCTHTTTNGCTAELRKKEPPH 440


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 419 IGRENVDLLLFLEPLNVPMTFH 354
           +GRE      F  P  + +TFH
Sbjct: 325 LGREISTYFTFTRPCGITLTFH 346


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -3

Query: 177 PPGVKWLQESIDIYNVNSPPI 115
           PP + W +   D+  +N P I
Sbjct: 339 PPPLVWRRNGADLETLNEPEI 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,868
Number of Sequences: 438
Number of extensions: 4363
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)