Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021947
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54150.1 68414.m06173 zinc finger (C3HC4-type RING finger) fa...    29   3.2  
At3g51910.1 68416.m05694 heat shock transcription factor family ...    27   9.6  
At2g42130.4 68415.m05214 expressed protein contains weak hit to ...    27   9.6  
At2g42130.3 68415.m05213 expressed protein contains weak hit to ...    27   9.6  
At2g42130.2 68415.m05212 expressed protein contains weak hit to ...    27   9.6  
At2g42130.1 68415.m05211 expressed protein contains weak hit to ...    27   9.6  

>At1g54150.1 68414.m06173 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 383

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -2

Query: 517 RDFPSFSICGGT--CTLSKGTIRRQLNQVCPPCG*SAARTLTFYSS 386
           R  P+F  CG    C     T+ R+LN  CP C  S   ++  Y S
Sbjct: 338 RRVPAFIPCGHVVCCRRCASTVERELNPKCPVCLQSIRGSMRVYYS 383


>At3g51910.1 68416.m05694 heat shock transcription factor family
           protein contains Pfam profile: PF00447 HSF-type
           DNA-binding domain
          Length = 272

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +1

Query: 499 RKMGSLSKAATKY*GLRNHDHSARVND*EEEDHTLVTIR 615
           RK GS S +  +   L    H  + N  EEEDH LV  R
Sbjct: 214 RKRGSSSMSELEVLALEMQGHGKQRNMLEEEDHQLVVER 252


>At2g42130.4 68415.m05214 expressed protein contains weak hit to
           Pfam PF04755: PAP_fibrillin
          Length = 250

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 261 NCTRISLNSIVKITDRLG*LLYVPRSHTSFVMKGHWNV*WF 383
           N  RI +N  +   +RL      PR  TS   +G WN  WF
Sbjct: 46  NMQRIDVNERITSLERLN---PTPRPTTSPCFEGRWNFEWF 83


>At2g42130.3 68415.m05213 expressed protein contains weak hit to
           Pfam PF04755: PAP_fibrillin
          Length = 271

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 261 NCTRISLNSIVKITDRLG*LLYVPRSHTSFVMKGHWNV*WF 383
           N  RI +N  +   +RL      PR  TS   +G WN  WF
Sbjct: 67  NMQRIDVNERITSLERLN---PTPRPTTSPCFEGRWNFEWF 104


>At2g42130.2 68415.m05212 expressed protein contains weak hit to
           Pfam PF04755: PAP_fibrillin
          Length = 269

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 261 NCTRISLNSIVKITDRLG*LLYVPRSHTSFVMKGHWNV*WF 383
           N  RI +N  +   +RL      PR  TS   +G WN  WF
Sbjct: 95  NMQRIDVNERITSLERLN---PTPRPTTSPCFEGRWNFEWF 132


>At2g42130.1 68415.m05211 expressed protein contains weak hit to
           Pfam PF04755: PAP_fibrillin
          Length = 270

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 261 NCTRISLNSIVKITDRLG*LLYVPRSHTSFVMKGHWNV*WF 383
           N  RI +N  +   +RL      PR  TS   +G WN  WF
Sbjct: 95  NMQRIDVNERITSLERLN---PTPRPTTSPCFEGRWNFEWF 132


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,444,991
Number of Sequences: 28952
Number of extensions: 291647
Number of successful extensions: 553
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)