Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021946
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    29   0.95 
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    27   2.9  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   5.1  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    26   5.1  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    25   8.9  
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    25   8.9  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    25   8.9  
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch...    25   8.9  

>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = +3

Query: 576 RLSPERDETKAIERAKNRINESLNAVADEKKKVQVDENELGPNILADRRNKLETASQGWR 755
           R + E+ + +A E+AK    E+    A+EK K + +EN       A+ + K ET     R
Sbjct: 643 REAEEKAKREAEEKAKREAEENAKREAEEKAKREAEENAKRE---AEEKVKRETEENAKR 699

Query: 756 K 758
           K
Sbjct: 700 K 700



 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 576 RLSPERDETKAIERAKNRINESLNAVADEKKKVQVDEN 689
           R + E+ + +A E+AK    E     A+EK K + +EN
Sbjct: 627 REAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEN 664



 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 576 RLSPERDETKAIERAKNRINESLNAVADEKKKVQVDEN 689
           R + E+ + +A E+AK    E     A+EK K + +EN
Sbjct: 563 REAEEQAKREAEEKAKREAEEKAKREAEEKAKREAEEN 600


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 149 TSILIFILARFSELAF*YTLNLLILFYNSKDYDQLFRIINAYTI 18
           TSI    L+ FS+  F Y L + +   N +  + LFR +N + I
Sbjct: 225 TSIKNTSLSHFSKFNFKYALPIHMSLENRRSLENLFRNMNTWDI 268


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 588  ERDETKAIERAKNRINESLNAVADEKKKVQVDEN 689
            ERDE    +RAKN+++    A  ++  K ++DE+
Sbjct: 1845 ERDEDIPNKRAKNKVSTDQTAADNKVTKPRLDES 1878


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 606 AIERAKNRINESLNAVADEKKKVQVDENELGPNILADRRNKLET 737
           AIE  +N +  S N+  +++    +DEN   P I   R+ ++ T
Sbjct: 38  AIELLENNVGSSKNSYQEDEGSSSIDEN--APLISIKRKRRIRT 79


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 108 CLLIYVEFINFIL*FERLRSAVSYNKRIHNTSER 7
           C L +  F N+ + F R RSA S +    NT  R
Sbjct: 319 CFLEFHAFFNYPMKFARSRSAYSTSANYSNTPPR 352


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -1

Query: 174 FGATPSNSHFY--FDFYFGSLQ*ACLLIYVEFINFIL*FERLRSAVSYNKRIHNTSERA 4
           F A   N+  Y   DF    L  AC+ +Y+ + N ++   RL  +V       +T+ RA
Sbjct: 427 FIALTENAQIYEELDFEKQRLFSACIEVYLSYCNTLIFLHRLNESVEGANICLDTARRA 485


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +1

Query: 76  KINKFNVYQKASSLKRAKIK--IKIEV*IRWCCTKQLFRSISRERCGFPAIR 225
           +++ F +Y +A SL  A     +++      CC+ + F     +RC F  I+
Sbjct: 479 ELSDFEMYMRARSLNPATFAGFVRLNHFTLLCCSPERFLQFRDDRCLFSPIK 530


>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 185

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 251 CSIHKQKHFFLYLVN*KIIGLCDLCVC 331
           CS++ QK FF+ +    +  +  LC C
Sbjct: 116 CSLNTQKFFFIIVAASNVYSIFQLCGC 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,933,981
Number of Sequences: 5004
Number of extensions: 57339
Number of successful extensions: 160
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)