Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021946
         (759 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0426 + 3364341-3364713,3364823-3364963,3365389-3365510,336...    29   4.0  
01_07_0039 - 40667598-40669880                                         29   4.0  
08_02_0023 + 11342173-11342249,11342496-11342736                       28   7.0  
03_05_0495 - 24907659-24908747                                         28   9.3  

>05_01_0426 +
           3364341-3364713,3364823-3364963,3365389-3365510,
           3365939-3366202,3366289-3366419,3366819-3367026,
           3367121-3367186,3367276-3367353,3368038-3368079
          Length = 474

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 591 RDETKAIERAKNRINESLNAVADEKKKVQVDENELG 698
           R   KAIE+  NR  E    V+  KKK +++E   G
Sbjct: 49  RSRAKAIEQVGNRTVEESAGVSSNKKKRRIEEETAG 84


>01_07_0039 - 40667598-40669880
          Length = 760

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 558 WRARVCRLSPERDETKAIERAKNRINESLNAVADEKKKVQVD 683
           +R+ V ++ P RD+    E A   +N++   ++D  KKV+ D
Sbjct: 93  YRSIVRQVEPVRDDLPGAEAALRLVNDAYAVLSDPAKKVRYD 134


>08_02_0023 + 11342173-11342249,11342496-11342736
          Length = 105

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +3

Query: 588 ERDETKAIERAKNRINESLNAVADEKKKVQVDENELGPNILADRRNKLETASQG 749
           ++DE K+ E + ++I   +  +  E  +++    ELG   LA+ RN  +T S+G
Sbjct: 32  QQDEVKSSEPSVHKIASQVKKLQKENIELRGRNAELGVE-LAELRNNFDTLSRG 84


>03_05_0495 - 24907659-24908747
          Length = 362

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -2

Query: 242 RTGWFDRIAGKPHRSRDIDLNSCLVQHHRIHTSILIFILAR 120
           R  W D++ G PH  R  ++++ L++  R       ++ AR
Sbjct: 301 RVNWTDQVEGHPHTYRPGEVSASLIKELRKSNGTYSYMFAR 341


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,870,766
Number of Sequences: 37544
Number of extensions: 362244
Number of successful extensions: 1078
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)