Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021946
         (759 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_5843| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_4107| Best HMM Match : M (HMM E-Value=8e-22)                        29   5.4  
SB_32916| Best HMM Match : Vps16_N (HMM E-Value=2.5e-07)               28   7.2  
SB_46225| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00052)        28   7.2  
SB_53103| Best HMM Match : DUF1388 (HMM E-Value=0.29)                  28   9.5  
SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1449

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 591 RDETKAIER-AKNRINESLNAVADEKKKVQVDENELGPN 704
           + E KA E+ AK   +++ N    E+KK ++DE  L PN
Sbjct: 35  KSEKKAKEKEAKQEASKAKNPGQGEEKKKEIDEESLDPN 73


>SB_5843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 74

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +1

Query: 514 SPKGLLRFRLRELMTGEPEFAVSALRETKPRP 609
           SPK +LR ++R   T + EFA++  R+TK RP
Sbjct: 21  SPK-MLRGKVRGSGTRKKEFAITTARQTKERP 51


>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
          Length = 2039

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 597 ETKAIERAKNRINESLNAVADEKKKVQVDENEL 695
           E + +E+ +  +NE +  ++ EK+K+Q   NEL
Sbjct: 521 EKQNLEKMRQSLNEQVEGLSAEKEKLQAANNEL 553


>SB_32916| Best HMM Match : Vps16_N (HMM E-Value=2.5e-07)
          Length = 369

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/52 (21%), Positives = 25/52 (48%)
 Frame = -2

Query: 653 DSVQRFIYSVLCSFNGLGFVSLRAETANSGSPVISSRSLKRSKPFGDRSPLL 498
           + +   I + LC+  G+ +  + ++    G P ++++ L       D+ PLL
Sbjct: 287 EEIAHAINAKLCNSTGISYTEIASKALEKGKPELATKLLDYEPKAADQVPLL 338


>SB_46225| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00052)
          Length = 649

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +3

Query: 561 RARVCRLSPERDETKAIERAKNRINESLNAVADEKKKVQVDENELGPNILADRRNKLETA 740
           +A+   ++  + +T  + + +  I   L AV D+K +V+  +  L   I   R+N L+ A
Sbjct: 111 KAKEDEINTLKQDTVRLTKMREAIQRRLRAVEDQKLEVEQQKETLKGQIAGLRKNLLKAA 170


>SB_53103| Best HMM Match : DUF1388 (HMM E-Value=0.29)
          Length = 462

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = +3

Query: 576 RLSPERDETKAIERAKNRINESLNAVADEKKKVQVDENELGPNILADRRNKLETASQGWR 755
           R + +R E K  E  KNR ++        + + +    E G N    +R ++ET  +G +
Sbjct: 147 RNTRKRQEQKTPEEGKNRKHQKKARTKTTRSRQEQKTPEEGKNKNHQKRARIETPEEGEK 206

Query: 756 K 758
           K
Sbjct: 207 K 207


>SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1845

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 6/57 (10%)
 Frame = +3

Query: 588 ERDETKAIERAKNRINES---LNAVADEKKKVQVDENELGPNI--LADRR-NKLETA 740
           E+ +TK +ER +N+I E+   ++ +A E +++Q +E     +I  L +RR N L++A
Sbjct: 807 EQAQTKVLERTRNQIQETNAKMHKLAVELERLQAEEKCTSKSINELKERRLNILQSA 863


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,059,089
Number of Sequences: 59808
Number of extensions: 429744
Number of successful extensions: 1161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)