Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021946
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21321-8|AAG00045.1|  296|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z75552-1|CAA99941.1|  920|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AL132904-25|CAB81956.2|  434|Caenorhabditis elegans Hypothetical...    28   8.3  
AC025727-9|ABD63208.1|  146|Caenorhabditis elegans Hypothetical ...    28   8.3  
AC025727-8|AAG23390.2|  223|Caenorhabditis elegans Hypothetical ...    28   8.3  
AC024776-20|AAK68473.2|  460|Caenorhabditis elegans Nuclear horm...    28   8.3  

>U21321-8|AAG00045.1|  296|Caenorhabditis elegans Hypothetical
           protein ZK177.2 protein.
          Length = 296

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 555 DWRARVCRLSPERDETKAIERAKNRINESLNAVADEKKKVQ 677
           D+    C   PER +   +     R+  SLN    +KKKV+
Sbjct: 226 DFSKSWCGADPERHDISRLHTVAKRVGHSLNGSKRDKKKVR 266


>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
            protein Y11D7A.14 protein.
          Length = 1464

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +3

Query: 588  ERDETKAIERAKNRINESLNAVAD--EKKKVQVDE 686
            ER+ T+ IER K ++NE L    +  +K+  ++DE
Sbjct: 1047 ERNSTRKIEREKEKLNEELTTAKEIIQKQAKKIDE 1081


>Z75552-1|CAA99941.1|  920|Caenorhabditis elegans Hypothetical
           protein W04D2.1a protein.
          Length = 920

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +3

Query: 585 PERDETKAIERAKNRINESLNAVADEKKKVQVDENELGPNILA 713
           PERD  K  E A NRI   L  V  E +K+  D   L  ++LA
Sbjct: 278 PERDWRKDAETAANRICRVLK-VNQENEKMMEDYENLASDLLA 319


>AL132904-25|CAB81956.2|  434|Caenorhabditis elegans Hypothetical
           protein Y111B2A.5a protein.
          Length = 434

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +3

Query: 576 RLSPERDETKAIERAKNRINESLNAVADEKKKVQVDENELGPNI 707
           R + +R++ +A+E+ KN +   +   AD+  +   +E +L   I
Sbjct: 65  RANHQREKDEAVEQKKNNLESQIQCDADDDDENSTEEQKLNNEI 108


>AC025727-9|ABD63208.1|  146|Caenorhabditis elegans Hypothetical
           protein Y73E7A.1b protein.
          Length = 146

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 600 TKAIERAKNRINESLNAVADEKKKVQVDENELGPNILADRRNKLE 734
           T+A    +    E +N   +EK+K +  + E+  ++L +  NKLE
Sbjct: 18  TRAHIHIRKEDEERINRELEEKRKQEAQKIEVAGDLLVENLNKLE 62


>AC025727-8|AAG23390.2|  223|Caenorhabditis elegans Hypothetical
           protein Y73E7A.1a protein.
          Length = 223

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 600 TKAIERAKNRINESLNAVADEKKKVQVDENELGPNILADRRNKLE 734
           T+A    +    E +N   +EK+K +  + E+  ++L +  NKLE
Sbjct: 95  TRAHIHIRKEDEERINRELEEKRKQEAQKIEVAGDLLVENLNKLE 139


>AC024776-20|AAK68473.2|  460|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 274 protein.
          Length = 460

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = +3

Query: 585 PERDETK--AIERAKNR---INESLNAVADEKKKVQVDENE 692
           PE D  K  A  +AK     +NESLN V    K +Q+DE+E
Sbjct: 285 PEEDARKENAATKAKLHPLFVNESLNCVGYPFKNLQIDEHE 325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,343,912
Number of Sequences: 27780
Number of extensions: 326286
Number of successful extensions: 934
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)