Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021946
         (759 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g21465.1 68416.m02707 expressed protein                             32   0.48 
At1g26310.1 68414.m03209 MADS-box protein, putative strong simil...    29   4.4  
At5g66030.2 68418.m08315 Golgi-localized GRIP domain-containing ...    28   5.9  
At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing ...    28   5.9  
At3g25840.1 68416.m03219 protein kinase family protein contains ...    28   5.9  
At1g23510.1 68414.m02953 expressed protein                             28   5.9  
At2g32240.1 68415.m03940 expressed protein contains Pfam profile...    28   7.7  
At1g76910.1 68414.m08953 hypothetical protein                          28   7.7  
At1g24200.1 68414.m03052 paired amphipathic helix repeat-contain...    28   7.7  

>At3g21465.1 68416.m02707 expressed protein
          Length = 388

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +3

Query: 552 NDWRARVCRLSPERDETKAIERAKNRINESLNAVADEKKKVQVDENELGPN 704
           N+W   + +   E+D+       K+ I   +NA+ +   +V+VD NEL  N
Sbjct: 333 NEWSVDIIKHQNEQDKKDVAASLKSDIPAMVNALVNSGLRVRVDLNELNKN 383


>At1g26310.1 68414.m03209 MADS-box protein, putative strong
           similarity to DNA-binding protein [Brassica rapa subsp.
           pekinensis] GI:6469345, SP|Q41276 Floral homeotic
           protein APETALA1 (MADS C) {Sinapis alba}; contains
           InterPro accession IPR002100: Transcription factor,
           MADS-box
          Length = 255

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +3

Query: 603 KAIERAKNRI-NESLNAVADEKKKVQVDENELGPNILADRRNKLET 737
           K I   KN++ NESLN +  ++K++Q +EN +    + +R N L T
Sbjct: 139 KHIRSRKNQLMNESLNHLQRKEKEIQ-EENSMLTKQIKERENILRT 183


>At5g66030.2 68418.m08315 Golgi-localized GRIP domain-containing
           protein contains Pfam profile PF01465: GRIP domain;
           supporting cDNA gi|20303028|gb|AF499634.1|
          Length = 765

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
 Frame = +3

Query: 609 IERAKNRINESLNAVADEKKKVQVDENELGPNI------LADRRNKLETASQ 746
           +ER + + NE+L A+  E+++++   N+L   I      L  + NK+ET  Q
Sbjct: 204 LERTRQQANEALKAMDAERQQLRSANNKLRDTIEELRGSLQPKENKIETLQQ 255


>At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing
           protein contains Pfam profile PF01465: GRIP domain;
           supporting cDNA gi|20303028|gb|AF499634.1|
          Length = 788

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
 Frame = +3

Query: 609 IERAKNRINESLNAVADEKKKVQVDENELGPNI------LADRRNKLETASQ 746
           +ER + + NE+L A+  E+++++   N+L   I      L  + NK+ET  Q
Sbjct: 204 LERTRQQANEALKAMDAERQQLRSANNKLRDTIEELRGSLQPKENKIETLQQ 255


>At3g25840.1 68416.m03219 protein kinase family protein contains
           Pfam profile: PF00069 eukaryotic protein kinase domain
          Length = 935

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 582 SPERDETKAIERAKNRINESLNAVADEKKKVQVDENEL 695
           SPE +E + + R K    + + A+ ++ K+    +NEL
Sbjct: 444 SPEEEEEELLNRIKEESRKRMEAILEKHKRKPEQQNEL 481


>At1g23510.1 68414.m02953 expressed protein
          Length = 250

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +3

Query: 591 RDETKAIERAKNRINESLNAVADEKKKVQVDENELGPNILADRRNKLE 734
           + ET   E A++ + + L    D +KK Q   N+  PN+  +RRN LE
Sbjct: 35  KSETNTHE-ARDEMKQQLKLWRDTEKKEQW--NDAPPNVKVERRNDLE 79


>At2g32240.1 68415.m03940 expressed protein contains Pfam profile:
           PF04508 viral A-type inclusion protein repeat
          Length = 775

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 621 KNRINESLNAVADEKKKVQVDENELGPNILADRRNKLET 737
           +  + E+LNAV  EKKK++   +E    I ++  N LE+
Sbjct: 141 EKELTENLNAVTSEKKKLEATVDEYSVKI-SESENLLES 178


>At1g76910.1 68414.m08953 hypothetical protein
          Length = 139

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 375 FTASLTLLFNVRIR*HGAIDFSERAKGRRWSPTQRHTCG 491
           +T ++T +   R+   G  +    A G RW  T +++CG
Sbjct: 35  WTETVTNIGRCRVSGRGGSELGMSASGNRWLATAKNSCG 73


>At1g24200.1 68414.m03052 paired amphipathic helix repeat-containing
           protein similar to Sin3 protein [Yarrowia lipolytica]
           GI:18076824; contains Pfam profile PF02671: Paired
           amphipathic helix repeat
          Length = 196

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 73  NKINKFNVYQKASSLKRAKIKIKIE 147
           NK+ KF+VY+K S+  + K+ +K E
Sbjct: 172 NKVTKFSVYRKDSNADKKKMNLKGE 196


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,196,128
Number of Sequences: 28952
Number of extensions: 293843
Number of successful extensions: 815
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)