Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021944
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0623 - 4580908-4582107 33 0.19
11_01_0694 - 5719188-5720400,5720439-5721194,5722004-5722247,572... 32 0.34
11_01_0710 - 5830475-5830595,5831498-5834124 31 1.0
01_06_1106 + 34563368-34563679 29 4.1
08_02_1182 + 24992256-24992708,24992942-24993238 28 5.5
07_01_0872 + 7246808-7246933,7246961-7247527 28 5.5
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477... 28 7.2
02_05_1253 + 35270040-35270044,35270213-35270297,35270809-352725... 28 7.2
10_08_0985 - 22042801-22042963,22043019-22043138,22043261-220435... 27 9.6
04_04_0449 - 25318322-25318618,25318839-25319234 27 9.6
03_05_0364 + 23495069-23495483,23496056-23496136,23496381-234964... 27 9.6
01_06_1466 + 37559600-37559795,37560597-37560730,37561252-375614... 27 9.6
01_01_0027 - 205450-206029,206706-207276,207408-207836,208438-20... 27 9.6
>03_01_0623 - 4580908-4582107
Length = 399
Score = 33.1 bits (72), Expect = 0.19
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -2
Query: 434 LVLPTLRVAAYRSVAHGAQALLPPARCMARHYLCSSLMPLHCFVF 300
L+LP L V+ YR HG LL P R + + L + CFV+
Sbjct: 91 LLLPPLCVSLYRGRRHGIGNLLLPRRLVGAAAVLGGLYAVSCFVY 135
>11_01_0694 -
5719188-5720400,5720439-5721194,5722004-5722247,
5723862-5723901
Length = 750
Score = 32.3 bits (70), Expect = 0.34
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 492 PNMCSQTAFLQGQHGVARADGGVVGQLGAVARLAAYMRWA-RSLHEL 629
PN+ T L HG+ R D G+ G GA RL + WA SL EL
Sbjct: 366 PNLGEIT--LGRMHGIRRIDKGIYGGPGAFPRLIGFHLWAMHSLEEL 410
>11_01_0710 - 5830475-5830595,5831498-5834124
Length = 915
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = -2
Query: 365 PARCMARHYLCSSLMPLHCFVFWSCSCLRFLKT*LNGPEKRRLTSSL 225
PA+ A H+L + LH F S SCLR L L+G RL +S+
Sbjct: 50 PAKIRALHFLGCGKIELHGVAFSSASCLRVLD--LSGCSILRLPASI 94
>01_06_1106 + 34563368-34563679
Length = 103
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +2
Query: 281 ASKSSSKTRNNAAALSC--YTGSVSPCSVRVGEGPVRHEPHSCRRPPAR 421
A+ +S+ R AA+ G V P + +RH P+ CRRPP R
Sbjct: 15 ATPTSTADRLGAASSQAPPRPGRVPPSASAPPPAELRHGPNRCRRPPWR 63
>08_02_1182 + 24992256-24992708,24992942-24993238
Length = 249
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +2
Query: 314 AAALSCYTGSVSPCSVRVGEGPVRHEPHSCRRPPARL 424
A A SC T ++ + P RH P CR P RL
Sbjct: 7 AVAFSCATVALPRALALLLAPPARHRPQHCRCPAHRL 43
>07_01_0872 + 7246808-7246933,7246961-7247527
Length = 230
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 413 VAAYRSVAHGAQAL-LPPARCMARHYLCSSLM 321
VAA + HGAQ + +P CM ++C SLM
Sbjct: 119 VAALKLRIHGAQKVDMPLPECMWNDFVCGSLM 150
>10_08_0324 +
16747117-16747330,16747432-16747559,16747675-16747744,
16747832-16747988,16748089-16748701,16749132-16749653,
16749686-16750279,16750359-16750709,16750808-16751395
Length = 1078
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 191 NELSEYFGIQVSTRMLTSSFPDHSARF*ENASKSSSKTRNNAAALSCYTGSVS 349
++ E F I+ T+ P + + EN + + K R ALS +TGSV+
Sbjct: 87 DDFEEEFQIKSPTKQKPPHEPVNFDVYSENGEQPAQKWRPGGPALSSFTGSVA 139
>02_05_1253 +
35270040-35270044,35270213-35270297,35270809-35272590,
35272710-35273237
Length = 799
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/31 (51%), Positives = 17/31 (54%)
Frame = -3
Query: 379 RPFSHPHAAWRDTTCVAA*CRCIVSCFGAAL 287
RPF H HA RD CVA C C FG A+
Sbjct: 484 RPF-HLHAMIRDAACVAR-CLCDFRGFGFAV 512
>10_08_0985 -
22042801-22042963,22043019-22043138,22043261-22043562,
22044055-22044351,22044448-22044556,22044826-22045358,
22045446-22045644,22045741-22045865,22045937-22046020,
22046093-22046221,22046337-22046465,22046593-22046739,
22047106-22047346,22047859-22047980
Length = 899
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 555 GVVGQLGAVARLAAYMRWA 611
G VG + AVA AAY+ WA
Sbjct: 770 GFVGSIAAVAAAAAYLAWA 788
>04_04_0449 - 25318322-25318618,25318839-25319234
Length = 230
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +2
Query: 314 AAALSCYTGSVSPCSVRVGEGPVRHEPHSCRRPPARL 424
A A SC ++ + P RH P CR P RL
Sbjct: 7 AVAFSCAAAALPRALALLLAPPARHRPQRCRCPAHRL 43
>03_05_0364 +
23495069-23495483,23496056-23496136,23496381-23496449,
23496778-23496883,23497461-23497491
Length = 233
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +3
Query: 465 RVRRKANLSPNMCSQTAFLQGQHGVARADGGVVGQLGAVARLAAYMRWARSLH 623
R ++ A+ +CS A G GVA A G G G + A MRW +LH
Sbjct: 74 RFKKSASGGSPVCSGGA--TGTGGVAAARSGNGGGGGKRSSRAPRMRWTTALH 124
>01_06_1466 +
37559600-37559795,37560597-37560730,37561252-37561437,
37562538-37562753,37563008-37563119,37563493-37563663,
37564621-37564684,37565555-37565685,37566263-37566393,
37566843-37566945,37567322-37567398,37567813-37567860,
37568162-37568311,37568810-37569010
Length = 639
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = -2
Query: 428 LPTLRVAAYRSVAHGAQALLPPARCMARHYLCSSLMPLHCFVFWSCSCLRF 276
+P L++ Q+++ + HY SL+ + C ++CSC +F
Sbjct: 164 VPKLKIVILVVSPFSCQSIMDDELILTPHYSNKSLITIRCRSRFTCSCNQF 214
>01_01_0027 -
205450-206029,206706-207276,207408-207836,208438-208525
Length = 555
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 9/60 (15%)
Frame = -3
Query: 436 SLCSQPCGWPPTGVWLMAHR---------PFSHPHAAWRDTTCVAA*CRCIVSCFGAALA 284
+L CG P+G W+ HR +S ++W DT A R S G ALA
Sbjct: 80 NLAKSLCGPSPSGCWVGGHRNNTASAFAWKWSDDSSSWNDTAFPADPLRANCSTTGCALA 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,904,873
Number of Sequences: 37544
Number of extensions: 356113
Number of successful extensions: 938
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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