Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021944
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44755| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)                  28   7.4  
SB_21927| Best HMM Match : SH3_1 (HMM E-Value=8.6)                     28   7.4  
SB_33543| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_44755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -3

Query: 493 GLRFAFLLTRSCG-NDDLSASLCS 425
           GL FAFLL  +CG NDD+  SL +
Sbjct: 11  GLMFAFLLPFTCGSNDDIEVSLAN 34


>SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)
          Length = 1799

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 409 PPTGVWLMAHRPFSHPHAAWRDT 341
           PPT  W +  R  S+P + W+DT
Sbjct: 399 PPTQAWGLGSRMQSYPTSIWQDT 421


>SB_21927| Best HMM Match : SH3_1 (HMM E-Value=8.6)
          Length = 446

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +3

Query: 504 SQTAFLQGQHGVARADGGVVGQLGAVARLA 593
           SQ AF+Q  + +ARA G    +L A+ARLA
Sbjct: 410 SQDAFVQNLYNIARAKGFDDKKLKALARLA 439


>SB_33543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 838

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 284 SKSSSKTRNNAAALSCYTGSVSPCSVRVGEGP 379
           ++ SS  RN+A + S YT    P SVR G  P
Sbjct: 15  ARDSSLIRNSAGSQSTYTLLYEPVSVRRGSHP 46


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,274,781
Number of Sequences: 59808
Number of extensions: 395272
Number of successful extensions: 1167
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)