Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021944
         (642 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT029698-1|ABL75755.1|  488|Drosophila melanogaster IP17441p pro...    29   5.4  
AJ586732-1|CAE52501.1|  103|Drosophila melanogaster Mod(mdg4)-53...    29   5.4  
AF313479-1|AAG29545.1| 4167|Drosophila melanogaster 1-beta dynei...    29   5.4  
U31961-6|AAA84405.1|  590|Drosophila melanogaster ABD-AII protein.     29   7.1  
AE014297-2266|AAF55360.2|  590|Drosophila melanogaster CG10325-P...    29   7.1  

>BT029698-1|ABL75755.1|  488|Drosophila melanogaster IP17441p
           protein.
          Length = 488

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = -2

Query: 341 YLCSSLMPLHCFVFWSCSCLRFLKT*LNGPEKRRLTSSLTPEFRSIPRVRYNFTHK 174
           + C S  P  C  FW CS  +          K   TS+LT   +SI  +R    HK
Sbjct: 419 FSCYSRNPGKCLAFWRCSMYK----------KMHCTSALTTHIKSIKSIRGFHNHK 464


>AJ586732-1|CAE52501.1|  103|Drosophila melanogaster Mod(mdg4)-53.5
           protein.
          Length = 103

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = -2

Query: 341 YLCSSLMPLHCFVFWSCSCLRFLKT*LNGPEKRRLTSSLTPEFRSIPRVRYNFTHK 174
           + C S  P  C  FW CS  +          K   TS+LT   +SI  +R    HK
Sbjct: 34  FSCYSRNPGKCLAFWRCSMYK----------KMHCTSALTTHIKSIKSIRGFHNHK 79


>AF313479-1|AAG29545.1| 4167|Drosophila melanogaster 1-beta dynein
            protein.
          Length = 4167

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +3

Query: 75   CFLSVYKLKDLQ*SCSRCRFVIKCLNYYFKIK--SFVCEVVTNSRN-TSEFRCQRG 233
            C L V   K ++    RCR V +C  YY+ ++  SFV  V   S N  +++  +RG
Sbjct: 4103 CPLPVIHFKPVENLKKRCRGVYQCPAYYYPVRSGSFVIAVDLKSGNEKADYWIKRG 4158


>U31961-6|AAA84405.1|  590|Drosophila melanogaster ABD-AII protein.
          Length = 590

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 278 NASKSSSKTRNNAAALSCYTGSVSPCSVRVGEGPVRHEPHSCRRP 412
           N+S S S + NN + L+   GS+SP  +    G   H P S   P
Sbjct: 76  NSSSSPSSSSNNNSNLNLSGGSLSPSHLSQHLGQSPHSPVSSSSP 120


>AE014297-2266|AAF55360.2|  590|Drosophila melanogaster CG10325-PB,
           isoform B protein.
          Length = 590

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 278 NASKSSSKTRNNAAALSCYTGSVSPCSVRVGEGPVRHEPHSCRRP 412
           N+S S S + NN + L+   GS+SP  +    G   H P S   P
Sbjct: 76  NSSSSPSSSSNNNSNLNLSGGSLSPSHLSQHLGQSPHSPVSSSSP 120


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,774,542
Number of Sequences: 53049
Number of extensions: 582039
Number of successful extensions: 1603
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1603
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2703623850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)