Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021944
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00052-2|AAK95881.1|  404|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z75713-9|CAB00053.1|  235|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z75713-8|CAB00056.1|  234|Caenorhabditis elegans Hypothetical pr...    27   8.6  
M73827-1|AAA27983.1|  234|Caenorhabditis elegans casein kinase I...    27   8.6  

>U00052-2|AAK95881.1|  404|Caenorhabditis elegans Hypothetical
           protein K02F3.6 protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 138 IKCLNYYFKIKSFVCEVVTNSRN 206
           I+CLN + K K FVC    N  N
Sbjct: 8   IQCLNKFSKYKKFVCHTTCNCPN 30


>Z75713-9|CAB00053.1|  235|Caenorhabditis elegans Hypothetical
           protein T01G9.6b protein.
          Length = 235

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -2

Query: 479 FSPHPKLR*RRPVSKLVLPTLRVAAYRSVAHGAQ 378
           F  HP LR RRPV++ V P L       VA+G Q
Sbjct: 168 FFVHPDLRPRRPVTQFV-PKLYGFKIHPVAYGGQ 200


>Z75713-8|CAB00056.1|  234|Caenorhabditis elegans Hypothetical
           protein T01G9.6a protein.
          Length = 234

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -2

Query: 479 FSPHPKLR*RRPVSKLVLPTLRVAAYRSVAHGAQ 378
           F  HP LR RRPV++ V P L       VA+G Q
Sbjct: 167 FFVHPDLRPRRPVTQFV-PKLYGFKIHPVAYGGQ 199


>M73827-1|AAA27983.1|  234|Caenorhabditis elegans casein kinase II
           beta subunit protein.
          Length = 234

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -2

Query: 479 FSPHPKLR*RRPVSKLVLPTLRVAAYRSVAHGAQ 378
           F  HP LR RRPV++ V P L       VA+G Q
Sbjct: 167 FFVHPDLRPRRPVTQFV-PKLYGFKIHPVAYGGQ 199


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,986,186
Number of Sequences: 27780
Number of extensions: 285287
Number of successful extensions: 719
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)