Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021944
         (642 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g43650.1 68414.m05011 integral membrane family protein / nodu...    29   2.0  
At4g00740.1 68417.m00101 dehydration-responsive protein-related ...    28   4.6  
At4g19530.1 68417.m02873 disease resistance protein (TIR-NBS-LRR...    28   6.1  
At1g31330.1 68414.m03833 photosystem I reaction center subunit I...    28   6.1  

>At1g43650.1 68414.m05011 integral membrane family protein / nodulin
           MtN21-related similar to MtN21 GI:2598575 (root nodule
           development) from [Medicago truncatula]similar to MtN21
           GI:2598575 (root nodule development) from [Medicago
           truncatula]
          Length = 343

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 507 QTAFLQGQHGVARADGGVVGQLGAV 581
           +T  L+  HGVA+  G +VG LGA+
Sbjct: 121 ETVTLKKSHGVAKVTGSMVGMLGAL 145


>At4g00740.1 68417.m00101 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 600

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
 Frame = +3

Query: 474 RKANLSPNMCSQTAFLQGQHGVARADGGVVGQ-----LGAVARLAAYMRWARSLHE 626
           ++ + S + CS    +     + R +G VV +     L  VAR+A  +RW+ S+HE
Sbjct: 519 KRQDSSKSRCSLVDLMVEMDRILRPEGKVVIRDSPEVLDKVARMAHAVRWSSSIHE 574


>At4g19530.1 68417.m02873 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1167

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 281  ASKSSSKTRNNAAALSCYTGSVSPCSVRVGEGPVRHEPHS 400
            +S  S+ TRN ++  +  +GSVS  ++R  +  + HE  S
Sbjct: 1122 SSSDSTPTRNGSSNTTTSSGSVSTNTIREEDSNILHEAQS 1161


>At1g31330.1 68414.m03833 photosystem I reaction center subunit III
           family protein contains Pfam profile: PF02507:
           photosystem I reaction center subunit III
          Length = 221

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +2

Query: 224 STRMLTSSFPDHSARF*ENASKSSSKTRNNAAALS 328
           S + LT S P  SARF  +  KSSS T  +  A S
Sbjct: 15  SNKSLTQSVPKSSARFVCSDDKSSSSTPQSMKAFS 49


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,155,259
Number of Sequences: 28952
Number of extensions: 264978
Number of successful extensions: 652
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)