Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021943
         (618 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    37   1e-04
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    25   0.51 
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    24   0.89 
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    24   0.89 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    24   0.89 
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   1.6  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   1.6  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   3.6  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    22   3.6  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   3.6  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    21   6.3  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 37.1 bits (82), Expect = 1e-04
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
 Frame = +2

Query: 272 LNVSLNKLYNL----------PRGFGSFPVLEILDLTYNNLNEKVLPGNFLIMDSLRALY 421
           +N+S NKL NL            G G    +++LDL++NN+          +  SL  LY
Sbjct: 195 VNMSHNKLINLVVAPSVPFEQDTGLGGLQNIKVLDLSFNNITSVAKQFFRPVELSLMQLY 254

Query: 422 LGDNDFEFLPPEI-GNLKKLQILSMRENDL 508
           LG N       ++ GN+  LQ+L +  N L
Sbjct: 255 LGHNKLLNATKDLFGNMPHLQVLDLSHNSL 284



 Score = 35.1 bits (77), Expect = 5e-04
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
 Frame = +2

Query: 254 IPKLRILNVSLNKLYNLPRGFGSFPVLE--ILDLTYNNLNEKVLPGNFLIMDSLRALYLG 427
           IP+L  LN+  N    L     SF  LE  +L L  +N++   +P   L   +L +L L 
Sbjct: 417 IPRLASLNLGHNSQLTLEINGLSFQGLEYTLLHLNLDNVSLSQVPA--LSTPNLLSLSLA 474

Query: 428 DNDFEFLPPEI-GNLKKLQILSMRENDLSKFP 520
            N    +  E+ GN+  L+ L++  NDLS  P
Sbjct: 475 FNSLPTVALEVAGNISSLRYLNLDYNDLSAVP 506



 Score = 32.7 bits (71), Expect = 0.003
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
 Frame = +2

Query: 287 NKLYNLPRG-FGSFPVLEILDLTYNNLNEKVLPGNFLIMDSLRALYLGDNDFEFLPPEIG 463
           NKL N  +  FG+ P L++LDL++N+L E      F     L+ L    N    +P ++ 
Sbjct: 258 NKLLNATKDLFGNMPHLQVLDLSHNSLYELDF-DTFRNTKKLQWLDTSHNRISEIPNDLF 316

Query: 464 N-LKKLQILSMRENDLSKFP 520
             L  L+I+    N L   P
Sbjct: 317 RFLGNLRIVDFSHNRLRSLP 336



 Score = 27.9 bits (59), Expect = 0.072
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
 Frame = +2

Query: 263 LRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLP--GNFLIMDSLRALYLGDND 436
           L + NVSL+++  L     S P L  L L +N+L    L   GN   + SLR L L  ND
Sbjct: 450 LNLDNVSLSQVPAL-----STPNLLSLSLAFNSLPTVALEVAGN---ISSLRYLNLDYND 501

Query: 437 FEFLPPEIGNLKKLQILSMRENDLS 511
              +P    +L +L+ LS+  N ++
Sbjct: 502 LSAVPIVTHSLTELRHLSLEGNPIT 526



 Score = 27.1 bits (57), Expect = 0.13
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 254 IPKLRILNVSLNKLYNLP-RGFGSFPVLEILDLTYNNLN 367
           +  L+ LN+  NK+  +    F + P LE LDL YN+++
Sbjct: 139 LKSLKRLNLKGNKIATIAYETFQNLPELEDLDLAYNSIS 177



 Score = 25.8 bits (54), Expect = 0.29
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = +2

Query: 263 LRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFLIMDSLRAL 418
           LRI++ S N+L +LP        LE LD+++N L +  LP   L + S + L
Sbjct: 322 LRIVDFSHNRLRSLPDNLFRETGLERLDVSHNLLGK--LPLTSLSLASAQTL 371



 Score = 21.4 bits (43), Expect = 6.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 57  EIDLVDKGISSLEEIPGLFSLENITRLSLSHNKISVV 167
           E+DL    ISSL     L   + ++ L LS+N++  +
Sbjct: 373 ELDLSWNSISSLSHGGQLARFKCLSWLDLSYNRLGQI 409


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -1

Query: 297 YSLFNETLRILNLGMMIS*LEALECCYWPSLEFLSC 190
           ++ F++ + + +LG   + +E L   YW ++EF  C
Sbjct: 374 FAQFSQEIGLASLGASDAEIEKLSTVYWFTVEFGLC 409


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 24.2 bits (50), Expect = 0.89
 Identities = 10/43 (23%), Positives = 24/43 (55%)
 Frame = -3

Query: 217 LAKFRISKLLKLASAAGTTEILLWLRDRRVMFSRENKPGISSR 89
           L +  I+  L+L+      ++ +W ++RRV + +E+ P  + +
Sbjct: 145 LRRIEIATCLRLSEK----QVKIWFQNRRVKYKKEDLPAAAGK 183


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 24.2 bits (50), Expect = 0.89
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -3

Query: 190 LKLASAAGTTE--ILLWLRDRRVMFSRENK 107
           +++A A   TE  I +W ++RR+ + +ENK
Sbjct: 273 IEIAHALCLTERQIKIWFQNRRMKWKKENK 302


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 24.2 bits (50), Expect = 0.89
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -3

Query: 190 LKLASAAGTTE--ILLWLRDRRVMFSRENK 107
           +++A A   TE  I +W ++RR+ + +ENK
Sbjct: 275 IEIAHALCLTERQIKIWFQNRRMKWKKENK 304


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +2

Query: 245 LIIIPKLRILNVSLNKLYNLPRGFGSFPVLE--ILDLTYNNLNEKVLPGNFLIMDSLRAL 418
           +I++P+ ++ ++ + K YN+         L   I  + YN ++ K   G  +  +S R  
Sbjct: 313 IILVPEEQVYHLEIEKYYNILYFCRIMVYLNSAINPILYNLMSSKFRTGFIICSESNRKF 372

Query: 419 Y 421
           Y
Sbjct: 373 Y 373


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 202 ISKLLKLASAAGTTE--ILLWLRDRRVMFSRENKPGISSRLDI 80
           I +  +LA   G +E  I +W ++RR    ++NK  I  +  I
Sbjct: 184 IKRKSELAENLGLSERQIKIWFQNRRAKERKQNKKRIEEKSQI 226


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = -3

Query: 160 EILLWLRDRRVMFSRENK 107
           +I +W ++RR+ + ++NK
Sbjct: 276 QIKIWFQNRRMKWKKDNK 293


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 469 EEATNFVDARERPVEVPRE 525
           EEAT   +    P+E+PR+
Sbjct: 164 EEATVVPEGSRTPIEIPRD 182


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = -3

Query: 160 EILLWLRDRRVMFSRENK 107
           +I +W ++RR+ + ++NK
Sbjct: 276 QIKIWFQNRRMKWKKDNK 293


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +1

Query: 271 PQCFIKQTV*LAKRLWFLPC 330
           P C+I   + L    WF+ C
Sbjct: 217 PYCYINCLIYLIGGFWFMQC 236


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,490
Number of Sequences: 336
Number of extensions: 2740
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)