Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021943
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    46   3e-06
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    42   5e-05
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    37   0.003
SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo...    32   0.076
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    29   0.41 
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch...    29   0.71 
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    28   0.94 
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    27   1.6  
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|...    27   2.2  
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S...    27   2.9  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    26   5.0  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   6.6  

>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 46.4 bits (105), Expect = 3e-06
 Identities = 26/71 (36%), Positives = 38/71 (53%)
 Frame = +2

Query: 254 IPKLRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFLIMDSLRALYLGDN 433
           +  L IL++S NK+  LP  FG+   L++L ++ N L E  LP     M +L  L + +N
Sbjct: 97  LESLEILDISRNKIKQLPESFGALMNLKVLSISKNRLFE--LPTYIAHMPNLEILKIENN 154

Query: 434 DFEFLPPEIGN 466
              F PP I N
Sbjct: 155 HIVFPPPHIAN 165



 Score = 46.0 bits (104), Expect = 4e-06
 Identities = 27/89 (30%), Positives = 45/89 (50%)
 Frame = +2

Query: 242 QLIIIPKLRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFLIMDSLRALY 421
           +++   +LR LN+  N L   P        LEILD++ N +  K LP +F  + +L+ L 
Sbjct: 70  EILKFTRLRYLNIRSNVLREFPESLCRLESLEILDISRNKI--KQLPESFGALMNLKVLS 127

Query: 422 LGDNDFEFLPPEIGNLKKLQILSMRENDL 508
           +  N    LP  I ++  L+IL +  N +
Sbjct: 128 ISKNRLFELPTYIAHMPNLEILKIENNHI 156



 Score = 35.5 bits (78), Expect = 0.006
 Identities = 22/62 (35%), Positives = 32/62 (51%)
 Frame = +2

Query: 341 LDLTYNNLNEKVLPGNFLIMDSLRALYLGDNDFEFLPPEIGNLKKLQILSMRENDLSKFP 520
           LDL++ NL E        I   +  L LG N  + + PEI    +L+ L++R N L +FP
Sbjct: 32  LDLSHLNLRELPYEQLERIQGRIARLALGHNFIKSIGPEILKFTRLRYLNIRSNVLREFP 91

Query: 521 GS 526
            S
Sbjct: 92  ES 93



 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 493 ARERPVEVPRELGQLARLRELHLQGNRLVVLPPEIGTLDL 612
           ++ R  E+P  +  +  L  L ++ N +V  PP I   DL
Sbjct: 129 SKNRLFELPTYIAHMPNLEILKIENNHIVFPPPHIANNDL 168


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 42.3 bits (95), Expect = 5e-05
 Identities = 29/83 (34%), Positives = 41/83 (49%)
 Frame = +2

Query: 263 LRILNVSLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFLIMDSLRALYLGDNDFE 442
           L+ LN++ NKL+ LP        L  LDL+YNN      P     +  L  L    N   
Sbjct: 504 LKELNIANNKLFFLPHSTRYLVNLTYLDLSYNNF--VTFPLIITELSQLETLNFSHNLLS 561

Query: 443 FLPPEIGNLKKLQILSMRENDLS 511
            +  +IG+L KL+ L ++ NDLS
Sbjct: 562 QISSKIGSLVKLKHLYLQFNDLS 584



 Score = 32.7 bits (71), Expect = 0.044
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
 Frame = +2

Query: 260 KLRILNVSLNKLYNLPRG--FGSFPVLEILDLTYNNLNE-KVLPGNFLIMDSLRALYLGD 430
           KL+ L++S N     PRG    +   LE+L+++ N++ E   L  + L  +SL+ L + +
Sbjct: 454 KLKRLDISNN--LRSPRGKPITALRQLEVLNMSRNDIYELDPLIFSGLSRNSLKELNIAN 511

Query: 431 NDFEFLPPEIGNLKKLQILSMRENDLSKFP 520
           N   FLP     L  L  L +  N+   FP
Sbjct: 512 NKLFFLPHSTRYLVNLTYLDLSYNNFVTFP 541



 Score = 32.7 bits (71), Expect = 0.044
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +2

Query: 179 SQLEQLRNSKLGQ*QHSRASSQLIIIPKLRILNVSLNKLYN-LPRGFGSFPVLEILDLTY 355
           ++L QL          S+ SS++  + KL+ L +  N L N LP+  G    LE +DL+Y
Sbjct: 545 TELSQLETLNFSHNLLSQISSKIGSLVKLKHLYLQFNDLSNRLPQEIGLLKNLETIDLSY 604

Query: 356 N 358
           N
Sbjct: 605 N 605



 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +3

Query: 48  NNPEIDLVDKGISSLEEIPGLFSLENITRLSLSHNKI 158
           +NP    +D     L  I   FS  N+    +SH K+
Sbjct: 635 SNPSATFIDFSFCPLTTIDPAFSYSNLVYFDISHAKL 671


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 18/42 (42%), Positives = 21/42 (50%)
 Frame = +2

Query: 407 LRALYLGDNDFEFLPPEIGNLKKLQILSMRENDLSKFPGSWG 532
           L  LY+  N+   LPPEIG LK L IL    N +   P   G
Sbjct: 183 LTELYINHNNLTRLPPEIGKLKNLVILDASGNSIKTIPPELG 224



 Score = 34.7 bits (76), Expect = 0.011
 Identities = 16/31 (51%), Positives = 21/31 (67%)
 Frame = +1

Query: 514 VPRELGQLARLRELHLQGNRLVVLPPEIGTL 606
           +P ELG L  LRE+ L  N + V+P E+GTL
Sbjct: 219 IPPELGLLTELREVLLFDNMISVIPAELGTL 249



 Score = 33.9 bits (74), Expect = 0.019
 Identities = 23/81 (28%), Positives = 38/81 (46%)
 Frame = +2

Query: 293 LYNLPRGFGSFPVLEILDLTYNNLNEKVLPGNFLIMDSLRALYLGDNDFEFLPPEIGNLK 472
           L N+      F  L  L + +NNL    LP     + +L  L    N  + +PPE+G L 
Sbjct: 170 LRNVSTDLFKFSFLTELYINHNNLTR--LPPEIGKLKNLVILDASGNSIKTIPPELGLLT 227

Query: 473 KLQILSMRENDLSKFPGSWGS 535
           +L+ + + +N +S  P   G+
Sbjct: 228 ELREVLLFDNMISVIPAELGT 248



 Score = 32.3 bits (70), Expect = 0.058
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 460 WKFEEATNFVDARERPVEVPRELGQLARLRELHLQGNRLVVLPPEIGTL 606
           +KF   T           +P E+G+L  L  L   GN +  +PPE+G L
Sbjct: 178 FKFSFLTELYINHNNLTRLPPEIGKLKNLVILDASGNSIKTIPPELGLL 226



 Score = 28.7 bits (61), Expect = 0.71
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 514 VPRELGQLARLRELHLQGNRLVVLPPEIGTL 606
           V  +L + + L EL++  N L  LPPEIG L
Sbjct: 173 VSTDLFKFSFLTELYINHNNLTRLPPEIGKL 203


>SPBC1861.08c |||U2 snRNP-associated protein Lea1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 239

 Score = 31.9 bits (69), Expect = 0.076
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +2

Query: 329 VLEILDLTYNNLNEKVLPGNFLIMDSLRALYLGDNDFEFLPPEIGN-LKKLQILSMREND 505
           V + +D T N++      GNF  M  L+ L  G+N    + P+IG  L  L+ LS+ +N 
Sbjct: 42  VHDAIDFTDNDIRYL---GNFPRMKRLQTLLCGNNRITAIAPDIGKVLPNLKTLSLAQNH 98

Query: 506 LSK 514
           L +
Sbjct: 99  LQE 101


>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 157 ILLWLRDRRVMFSRENKPGISSRLDIPLSTKSI 59
           IL W+   + MFSR+  P ++S L +P   K I
Sbjct: 89  ILSWISPLKKMFSRKKSPTLTSSLPVPGMPKGI 121


>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 416 KHGDCP*SRSSQVILFHSNYCMLDPIS 336
           +HG  P   SS ++ ++ NYC   P+S
Sbjct: 210 EHGSSPLESSSGLVYYNRNYCSTSPLS 236


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 25/99 (25%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
 Frame = +2

Query: 236 SSQLIIIPKLRILNVSLNKLYNLPRGFGSFPVLEILD-LTYNNLNEKVLPG-NFLI-MDS 406
           S+++     L  L+  L +LY    G  SF  +E+L+ L   +++  ++   ++L  + +
Sbjct: 201 SNRITQFENLACLSHCLRELYVSHNGLTSFSGIEVLENLEILDVSNNMIKHLSYLAGLKN 260

Query: 407 LRALYLGDND---FEFLPPEIGNLKKLQILSMRENDLSK 514
           L  L+  +N+   F+ +  E+  LKKL+ +    N L K
Sbjct: 261 LVELWASNNELSSFQEIEDELSGLKKLETVYFEGNPLQK 299


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -1

Query: 489 DKICSFFKFPISGGRNSKSLSPKYKARRLSIIKKFPGNTFSFKL 358
           +K+ S +   I GGRNS SL+P   A   + +  FP +  SF L
Sbjct: 681 EKLMSPYNKSIGGGRNSNSLTP--NANLGADVSFFPTDDTSFLL 722


>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -1

Query: 618 AGEVQCSDLRRQHDEAVPLQVQLAEARQLPQLPG--NFDRSFSRIDKICSF 472
           A +VQCS  R  HD A+  ++  +E   +P   G  N   +     K CSF
Sbjct: 29  AFKVQCSGCREIHDNAI--EISRSETHSIPGSKGEANLIWTCKNCRKTCSF 77


>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
           L3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 326

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 281 SLNKLYNLPRGFGSFPVLEILDLTYNNLNEKVLPG 385
           S  KL+++ + FG F VLE +   Y  L E+ + G
Sbjct: 81  SNEKLWSIGKVFGDFYVLEYIKCKYPRLPEEAVHG 115


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 78  GISSLEEIPGLFSLENITRLSLSHNKIS 161
           G + +EEI  + SL+N+  L L +NK++
Sbjct: 743 GNNEIEEIEEISSLQNLMVLQLDNNKLT 770


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
 Frame = -1

Query: 504 SFSRIDKICSFFKFPISGGRNSKSLSPKYKARRLSIIKKFP-GNTFS---FKLLYVRSNI 337
           S   +DK+    K+ +    +       YK +R SI++KFP  N  S     LL    + 
Sbjct: 154 SLDNLDKV----KYLLHDSSSLTKAFDSYKEKRPSIVEKFPLHNLLSRWIHSLLIKSISY 209

Query: 336 SSTGKEPKPLGKLYSLFNETLRILN 262
           + T K+   +  L ++ N +L +L+
Sbjct: 210 AQTEKQEAKVTPLLAIINMSLVLLS 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,286,439
Number of Sequences: 5004
Number of extensions: 45933
Number of successful extensions: 168
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)