Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021943
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    34   0.001
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    25   0.78 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   1.0  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    22   4.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   9.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 33.9 bits (74), Expect = 0.001
 Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 7/107 (6%)
 Frame = +2

Query: 185 LEQLRNSKL-GQ*QHSRASSQLIIIPKLRILNVSLNKLYNLPR-GFGSFPVLEILDLTYN 358
           L+QL   +L G    + +   L  +P L+ILN++ NK+ ++ R  F     LE + L  N
Sbjct: 477 LDQLTGLRLIGNDIGNLSRGMLWDLPNLQILNLARNKVQHVERYAFERNMRLEAIRLDGN 536

Query: 359 NLNEKVLPGNFLIMDSLRALYLGDN-----DFEFLPPEIGNLKKLQI 484
            L++  + G F  + SL  L L +N     D+ F+P   GNLK L I
Sbjct: 537 FLSD--INGVFTSIASLLLLNLSENHIEWFDYAFIP---GNLKWLDI 578



 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 535 LARLRELHLQGNRLVVLP 588
           L  L  L L GNRLV  P
Sbjct: 889 LRSLEILRLSGNRLVTFP 906


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -1

Query: 297 YSLFNETLRILNLGMMIS*LEALECCYWPSLEFLSC 190
           ++ F++ + + +LG     +E L   YW ++EF  C
Sbjct: 352 FAQFSQEIGLASLGASDEEIEKLSTIYWFTVEFGLC 387


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -3

Query: 190 LKLASAAGTTE--ILLWLRDRRVMFSRENK 107
           +++A A   TE  I +W ++RR+ + +ENK
Sbjct: 301 IEIAHALCLTERQIKIWFQNRRMKWKKENK 330


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -3

Query: 190 LKLASAAGTTE--ILLWLRDRRVMFSREN 110
           +++A A   TE  I +W ++RR+ + +EN
Sbjct: 39  IEIAHALCLTERQIKIWFQNRRMKWKKEN 67


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = +1

Query: 376 ITWELLDYGQSP 411
           + WE++ YG+ P
Sbjct: 827 VCWEVMSYGERP 838


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,238
Number of Sequences: 438
Number of extensions: 3207
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)