Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021942
(744 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37) 138 6e-33
SB_41135| Best HMM Match : Ribonuc_red_lgN (HMM E-Value=0.78) 31 0.75
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0) 30 1.7
SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34) 30 2.3
SB_32083| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_31430| Best HMM Match : Exo70 (HMM E-Value=2) 29 4.0
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0) 29 4.0
SB_27733| Best HMM Match : Filamin (HMM E-Value=0.22) 29 4.0
SB_21989| Best HMM Match : Spectrin (HMM E-Value=0) 29 5.3
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 5.3
SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08) 28 7.0
SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38) 28 7.0
SB_27097| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
Length = 261
Score = 138 bits (333), Expect = 6e-33
Identities = 63/94 (67%), Positives = 77/94 (81%)
Frame = +1
Query: 229 GKKHNDAQSIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGA 408
GK ++I+ HL+NNP LEKLLPHIKGN+GFVFT+ DL +VR ++ENKV APA+ G
Sbjct: 38 GKNTMIRKAIRGHLENNPDLEKLLPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGV 97
Query: 409 IAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISR 510
IAP+ V +PA NTGLGPEKTSFFQAL+IPTKI+R
Sbjct: 98 IAPIDVFVPAGNTGLGPEKTSFFQALAIPTKIAR 131
Score = 71.3 bits (167), Expect = 8e-13
Identities = 34/46 (73%), Positives = 37/46 (80%)
Frame = +2
Query: 119 QLLDEYPKCFIVGADNVGSQQMQQIRISLSGSSIVLMGKNTMMRKA 256
Q LDEYPK F+VG DNVGS+QMQ IR SL G VLMGKNTM+RKA
Sbjct: 1 QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKA 46
Score = 33.1 bits (72), Expect = 0.24
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +3
Query: 492 PYQDFKGTIEIINDVHILKPGDKVGA 569
P + +GTIEIINDVH++K +K+ A
Sbjct: 126 PTKIARGTIEIINDVHLIKKDEKLKA 151
>SB_41135| Best HMM Match : Ribonuc_red_lgN (HMM E-Value=0.78)
Length = 230
Score = 31.5 bits (68), Expect = 0.75
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = -3
Query: 613 ENGEMFNMLRRVASEAPTLSPGFKMCTSLMISIVPLKSW 497
+N E + LRRV +E+ T P CTSLM +I +K W
Sbjct: 90 KNAETIDALRRVIAESYTPRP----CTSLMNAIFDIKEW 124
>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
Length = 870
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = -1
Query: 486 KSLEERGLLWTEAGVVGGNDD*QWG 412
K+LEERGLL+ +GV GG + ++G
Sbjct: 160 KALEERGLLFVGSGVSGGEEGARYG 184
>SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1142
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1
Query: 172 LATDAADPHLAKW-LQYRAHGKKHNDAQSIKDHLDNNPALEKLLPHIKGNVGFVFTRGDL 348
L + + DP ++ ++ R+HG + + +N LEK+L G + T
Sbjct: 11 LRSSSDDPKQDRYHMELRSHGFQCTSIPVLSFEFENLDKLEKMLSEPTEYGGIILTSARG 70
Query: 349 VEVRDKLLENKV 384
VE +K +E K+
Sbjct: 71 VEAMEKCIEEKI 82
>SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)
Length = 1197
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -2
Query: 572 RSSNLVTGLQDVYIVDDFNSTLEILVGIER 483
R NLVT L DVYI ++ S L+I +E+
Sbjct: 295 RDKNLVTNLSDVYIGSNYRSILDIERRVEQ 324
>SB_32083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 85
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/73 (26%), Positives = 28/73 (38%)
Frame = +2
Query: 161 DNVGSQQMQQIRISLSGSSIVLMGKNTMMRKASKTTWTTIQPSRNCCHTSRATLASCSPA 340
D +G QQ + ++ L L+G + R+ + T SR C + SCS
Sbjct: 1 DGIGQQQPKLYKLVLPNFGFQLIGYPGIYRQTGRGEEVTWHGSRTCTLHRKLAGVSCSCC 60
Query: 341 ETSLRSVTNCWRT 379
SL W T
Sbjct: 61 GNSLLHTHFTWTT 73
>SB_31430| Best HMM Match : Exo70 (HMM E-Value=2)
Length = 853
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = -2
Query: 599 VQHVEKGGFRSSNLVTGLQDVYIVDDFNSTLEILVGIERAWKKEVF 462
V++ EK GF +L+ L D+Y+ + + + +R+++KE+F
Sbjct: 719 VKNPEKYGFEPKSLLDRLTDIYVHLNTDEFATAVASDQRSYRKELF 764
>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
Length = 672
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 440 WAGMTTDNGAMAPGRAGAWTLFSNSL 363
W+ T D PGRA AW+L+S +L
Sbjct: 594 WSIATLDGKDQPPGRAWAWSLWSTTL 619
>SB_27733| Best HMM Match : Filamin (HMM E-Value=0.22)
Length = 278
Score = 29.1 bits (62), Expect = 4.0
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Frame = +1
Query: 403 GAIAPLSVVIPAHNTGLGPEKT-----SFFQALSIPTKISRVLLKSSTMYTS-*SPVTRL 564
G + PL+VVI ++ G G E T + LS+ +RV + S Y S S V +
Sbjct: 93 GPVIPLNVVIQFYDDGYGYEFTYTPPDDGYYKLSVTVNGARV--RGSPCYWSVRSKVDLV 150
Query: 565 ELLKPPFSTC*TSLHSHMVLLLSRYMILELFLHLK 669
++ K P + S+ SH+ L R +LE L L+
Sbjct: 151 KMFKEPANNHLKSIGSHVAL---RVQLLEASLELE 182
>SB_21989| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 1805
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 166 RGLATDAADPHLAKWLQYRAHGKKHNDAQSIKD 264
R L D D L K ++YR +K ND QS++D
Sbjct: 320 RTLPEDGMDGVLLKAMKYRELDRKLNDRQSVRD 352
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 133 VPKMFHRGCR*RGLATDAADPH-LAKWLQYRAHGKKHNDAQSIK 261
VPKMFH RG+ T+A P + ++L+ R G++ +A ++
Sbjct: 3856 VPKMFHGNRDNRGIKTNAIFPTIITRYLRIRPMGRRGLNAMRVE 3899
>SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
Length = 595
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +2
Query: 254 ASKTTWTTIQPSRNCCHTSRATLASCSPA 340
A ++ WT P C H ++ A C PA
Sbjct: 16 AGESNWTRCSPVCKCAHIDKSMAAVCRPA 44
>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 250 QSIKDHLDNNPALEKLLPHIKGNVGFVFTRGDL 348
+ +K HLDN P L K LP + G + + + GDL
Sbjct: 174 KELKSHLDNLPDLSK-LPDVDGGLAPLPSAGDL 205
>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
Length = 509
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 377 FSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSR 267
FS+S + T KP +CG SFS++G LSR
Sbjct: 464 FSDSSTLTKRLRTHTGEKPYQCRICGMSFSQSGNLSR 500
>SB_27097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 294
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 604 LHSHMVLLLSRYMILELFLHLKFWTSNQKIS 696
L S +++++ RY+ + LH + W S +K+S
Sbjct: 145 LLSMLLMMVDRYIAIAWGLHYRIWKSQRKVS 175
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,235,549
Number of Sequences: 59808
Number of extensions: 554656
Number of successful extensions: 1574
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1572
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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