Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021942
         (744 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    27   0.81 
X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.             23   7.5  
AF316638-1|AAG45166.1|  211|Anopheles gambiae glutathione S-tran...    23   7.5  
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    23   7.5  
AB097148-1|BAC82627.1|  357|Anopheles gambiae gag-like protein p...    23   10.0 
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    23   10.0 

>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 26.6 bits (56), Expect = 0.81
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 309 DVWQQFLEGWIVVQVVFDALRIIVFFPMST 220
           D++ Q  E W  V +V D L++ +FF ++T
Sbjct: 461 DLYIQTREDWKYVAMVIDRLQLYIFFIVTT 490


>X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.
          Length = 1231

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 14/64 (21%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = +3

Query: 561 VGASEATLLNMLNISPFS-YGLVVKQVYDSGT--IFAPEILDIKPEDLRAKFQAGVANVA 731
           VG +E+   +++N+  F+ Y + +  +Y +G   +     + +KPED+    +A   +  
Sbjct: 261 VGVTESA--DLINLEKFAQYAVAIAAMYKTGLGKLSEKATVKVKPEDVPLNLRAHDVSTH 318

Query: 732 ALSL 743
           +++L
Sbjct: 319 SMTL 322


>AF316638-1|AAG45166.1|  211|Anopheles gambiae glutathione
           S-transferase D12 protein.
          Length = 211

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 250 QSIKDHLDNNPALEKLLPHIKGNVGFV 330
           Q++  HL NNP  ++ L  +K  V  V
Sbjct: 109 QAVLSHLRNNPITDEHLAKVKRGVEIV 135


>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 530 VDDFNSTLEILVGIERAWKKEV 465
           +DD  +T+E  + I R W + V
Sbjct: 655 IDDLENTIETSINIIRQWMESV 676


>AB097148-1|BAC82627.1|  357|Anopheles gambiae gag-like protein
           protein.
          Length = 357

 Score = 23.0 bits (47), Expect = 10.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 370 TVCHGPQRGLRG*TRSQRCP*CVATVSRGLDC 275
           T+C G   G+    ++Q C  C A V  GL+C
Sbjct: 12  TLC-GEVTGVSYRGQAQTCRNCAAPVHHGLNC 42


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 23.0 bits (47), Expect = 10.0
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +1

Query: 157 CR*RGLATDAADPHLAKWLQYRAHGK-KHNDAQSIKDH 267
           C  +G  T A  P++A W   R HG+      Q + DH
Sbjct: 854 CSTKGRTTHALIPNIAAWTS-RKHGEVNFYMTQFLSDH 890


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 834,948
Number of Sequences: 2352
Number of extensions: 16648
Number of successful extensions: 57
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 76507752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)