Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021942
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    27   0.25 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    25   0.57 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    25   0.57 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   3.0  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   5.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   7.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.2  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   9.2  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 309 DVWQQFLEGWIVVQVVFDALRIIVFFPMST 220
           D++ Q  E W  V +V D L++ +FF ++T
Sbjct: 462 DLYIQTREDWKYVAMVIDRLQLYIFFLVTT 491


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 552 GDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAP 665
           G+  G S  +L     ISP + GLV + +  SGT+ AP
Sbjct: 251 GESAGGSSVSLHL---ISPVTRGLVRRGILQSGTLNAP 285


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 552 GDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAP 665
           G+  G S  +L     ISP + GLV + +  SGT+ AP
Sbjct: 251 GESAGGSSVSLHL---ISPVTRGLVRRGILQSGTLNAP 285


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 479 WKKEVFSGPRPVLWAGMTTD 420
           WK     GP+PV + G T D
Sbjct: 29  WKSRGVVGPKPVPFFGTTKD 48


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 338 RVNTKPTLPLMCGNSFSRAGLL 273
           R +T P    +CG +FSR  LL
Sbjct: 37  RTHTLPCKCHLCGKAFSRPWLL 58


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 554 TGLQDVYIVDDFNSTLEIL 498
           TG+ D+++ DD N  +  L
Sbjct: 114 TGISDLFVFDDLNDYINRL 132


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 89  WKSNYFVKIIQLLDEYP 139
           W+   F  ++++LDE+P
Sbjct: 862 WRHWKFPNLVEVLDEFP 878


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 400 DELELGLCSPTVCHGPQR 347
           D +E G+  PT C G  +
Sbjct: 361 DAVEYGIIGPTTCMGDHK 378


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,827
Number of Sequences: 438
Number of extensions: 4831
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)