Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021942
(744 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 101 7e-22
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 99 3e-21
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 99 3e-21
At1g58220.1 68414.m06612 myb family transcription factor contain... 33 0.26
At4g33550.1 68417.m04768 protease inhibitor/seed storage/lipid t... 31 0.61
At3g50610.1 68416.m05534 hypothetical protein 31 0.81
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put... 29 2.5
At5g39830.2 68418.m04825 DegP protease, putative contains simila... 29 4.3
At5g39830.1 68418.m04824 DegP protease, putative contains simila... 29 4.3
At5g01730.1 68418.m00091 expressed protein 28 5.7
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa... 28 7.5
At3g56700.1 68416.m06307 male sterility protein, putative simila... 28 7.5
At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein con... 28 7.5
At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB protein... 28 7.5
At5g55730.1 68418.m06947 fasciclin-like arabinogalactan-protein ... 27 9.9
At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-conta... 27 9.9
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 27 9.9
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 101 bits (241), Expect = 7e-22
Identities = 47/79 (59%), Positives = 61/79 (77%)
Frame = +3
Query: 507 KGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKP 686
KGT+EII V ++K GDKVG+SEA LL L I PFSYGLVV+ VYD+G++F PE+L++
Sbjct: 152 KGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVYDNGSVFNPEVLNLTE 211
Query: 687 EDLRAKFQAGVANVAALSL 743
+DL KF AGV+ + ALSL
Sbjct: 212 DDLVEKFAAGVSMITALSL 230
Score = 97.9 bits (233), Expect = 6e-21
Identities = 48/96 (50%), Positives = 66/96 (68%), Gaps = 2/96 (2%)
Frame = +1
Query: 229 GKKHNDAQSIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARP 402
GK +S++ H D N A LLP ++GNVG +FT+GDL EV +++ + KV APAR
Sbjct: 57 GKNTMMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARV 116
Query: 403 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISR 510
G +AP+ VV+ NTGL P +TSFFQ L+IPTKI++
Sbjct: 117 GLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINK 152
Score = 67.7 bits (158), Expect = 8e-12
Identities = 33/59 (55%), Positives = 42/59 (71%)
Frame = +2
Query: 80 KATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLSGSSIVLMGKNTMMRKA 256
KA K Y K+ QLL+EY + +V ADNVGS Q+Q IR L G S+VLMGKNTMM+++
Sbjct: 7 KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRS 65
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 99.1 bits (236), Expect = 3e-21
Identities = 48/96 (50%), Positives = 68/96 (70%), Gaps = 2/96 (2%)
Frame = +1
Query: 229 GKKHNDAQSIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARP 402
GK +S++ H +N N A+ LLP ++GNVG +FT+GDL EV +++ + KV APAR
Sbjct: 56 GKNTMMKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARV 115
Query: 403 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISR 510
G +AP+ VV+ NTGL P +TSFFQ L+IPTKI++
Sbjct: 116 GLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINK 151
Score = 98.3 bits (234), Expect = 5e-21
Identities = 44/79 (55%), Positives = 61/79 (77%)
Frame = +3
Query: 507 KGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKP 686
KGT+EII V ++K GDKVG+SEA LL L I PFSYGLVV+ VYD+G++F+PE+LD+
Sbjct: 151 KGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTE 210
Query: 687 EDLRAKFQAGVANVAALSL 743
+ L KF +G++ V +L+L
Sbjct: 211 DQLVEKFASGISMVTSLAL 229
Score = 70.9 bits (166), Expect = 8e-13
Identities = 34/64 (53%), Positives = 44/64 (68%)
Frame = +2
Query: 65 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLSGSSIVLMGKNTM 244
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR L G S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 245 MRKA 256
M+++
Sbjct: 61 MKRS 64
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 99.1 bits (236), Expect = 3e-21
Identities = 48/96 (50%), Positives = 68/96 (70%), Gaps = 2/96 (2%)
Frame = +1
Query: 229 GKKHNDAQSIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARP 402
GK +S++ H +N N A+ LLP ++GNVG +FT+GDL EV +++ + KV APAR
Sbjct: 56 GKNTMMKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARV 115
Query: 403 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISR 510
G +AP+ VV+ NTGL P +TSFFQ L+IPTKI++
Sbjct: 116 GLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINK 151
Score = 98.3 bits (234), Expect = 5e-21
Identities = 44/79 (55%), Positives = 61/79 (77%)
Frame = +3
Query: 507 KGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKP 686
KGT+EII V ++K GDKVG+SEA LL L I PFSYGLVV+ VYD+G++F+PE+LD+
Sbjct: 151 KGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTE 210
Query: 687 EDLRAKFQAGVANVAALSL 743
+ L KF +G++ V +L+L
Sbjct: 211 DQLVEKFASGISMVTSLAL 229
Score = 70.9 bits (166), Expect = 8e-13
Identities = 34/64 (53%), Positives = 44/64 (68%)
Frame = +2
Query: 65 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLSGSSIVLMGKNTM 244
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR L G S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 245 MRKA 256
M+++
Sbjct: 61 MKRS 64
>At1g58220.1 68414.m06612 myb family transcription factor contains
Pfam profile: PF00249: Myb-like DNA-binding domain
Length = 834
Score = 32.7 bits (71), Expect = 0.26
Identities = 33/102 (32%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Frame = -2
Query: 554 TGLQDVYIVDDFNSTLEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAPGRAGAWTLF 375
TGLQ N L + VG R K++ G P+L +G T GA A G + TL
Sbjct: 255 TGLQRTEAQMAANRALSLAVG-NRLPSKKLAVGMTPMLSSG--TIKGAQANGASSGSTLQ 311
Query: 374 SN--------SLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLL 273
+LSR +T P ++ + GNS SRA L+
Sbjct: 312 GQQQPQPQIQALSRATTSVPVAKSRVPVKKTTGNSTSRADLM 353
>At4g33550.1 68417.m04768 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein contains Pfam
protease inhibitor/seed storage/LTP family domain
PF00234
Length = 115
Score = 31.5 bits (68), Expect = 0.61
Identities = 26/74 (35%), Positives = 34/74 (45%)
Frame = +2
Query: 146 FIVGADNVGSQQMQQIRISLSGSSIVLMGKNTMMRKASKTTWTTIQPSRNCCHTSRATLA 325
F++G+DNV + Q +LSG LM N R S + PSR+CC R
Sbjct: 17 FMIGSDNVHVAKAQVCGANLSG----LM--NECQRYVSNAGPNSQPPSRSCCALIRPIDV 70
Query: 326 SCSPAETSLRSVTN 367
C+ S R VTN
Sbjct: 71 PCACRYVS-RDVTN 83
>At3g50610.1 68416.m05534 hypothetical protein
Length = 229
Score = 31.1 bits (67), Expect = 0.81
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = +1
Query: 220 RAHGKKHNDAQSIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRD-KLLENKVQAPA 396
+ + + H A D + +P + H KGNV + D KLL+ VQ
Sbjct: 17 KTNDQDHFKAGFTDDFVPTSPGNSPGVGHKKGNVNVEGFQDDFKPTEGRKLLKTNVQDHF 76
Query: 397 RPGAIAPLSVVIPAHNTGLGPEK 465
+ G+ + P H+ G+G +K
Sbjct: 77 KTGSTDDFAPTSPGHSPGVGHKK 99
>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 890
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 274 NNPALEKLL--PHIKGNVGFVFTRGDLVEVRDKLL 372
N P ++K PHI VGF+ T+GD+ + D L
Sbjct: 781 NQPVIDKTRERPHINDWVGFMLTKGDIKSIVDPKL 815
>At5g39830.2 68418.m04825 DegP protease, putative contains
similarity to DegP protease precursor GI:2565436 from
[Arabidopsis thaliana]
Length = 434
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = -2
Query: 572 RSSNLVTGLQDVYIVDDFNSTLEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAPGRA 393
+S++L G Q + I + F + VG+ +++FS + G+ TD A+ PG +
Sbjct: 234 QSNSLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQTGVTIGGGIQTD-AAINPGNS 292
Query: 392 G 390
G
Sbjct: 293 G 293
>At5g39830.1 68418.m04824 DegP protease, putative contains
similarity to DegP protease precursor GI:2565436 from
[Arabidopsis thaliana]
Length = 448
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = -2
Query: 572 RSSNLVTGLQDVYIVDDFNSTLEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAPGRA 393
+S++L G Q + I + F + VG+ +++FS + G+ TD A+ PG +
Sbjct: 234 QSNSLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQTGVTIGGGIQTD-AAINPGNS 292
Query: 392 G 390
G
Sbjct: 293 G 293
>At5g01730.1 68418.m00091 expressed protein
Length = 1192
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +1
Query: 445 TGLGPEKTSFFQALSIPTKISRVLLKSSTMYTS*SPVTRLELLKPPFSTC*TSLHSHM 618
TG +TS + S PT+ V ++SS + S +T +E L P+ TSL+ H+
Sbjct: 822 TGSANSRTSSDE--SPPTQNGSVGVQSSPLDVFPSSITEIEALHAPYQEIFTSLNDHI 877
>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 666
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -2
Query: 425 TDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLP 312
T+NGA G A S SLS S SP VN + LP
Sbjct: 205 TENGAWNEGLAQYDASSSLSLSMPSQNSPNVNNQSGLP 242
>At3g56700.1 68416.m06307 male sterility protein, putative similar
to SP|Q08891 Male sterility protein 2 {Arabidopsis
thaliana}; contains Pfam profile PF03015: Male sterility
protein
Length = 527
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 284 PSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSK 388
P R HT+R SC ETS +VT+ K++
Sbjct: 33 PRRRLSHTTRRVQTSCFYGETSFEAVTSLVTPKTE 67
>At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-glucosidase BGQ60 precursor GB:A57512
[Hordeum vulgare]; similar to beta-mannosidase enzyme
(GI:17226270) [Lycopersicon esculentum]
Length = 512
Score = 27.9 bits (59), Expect = 7.5
Identities = 30/110 (27%), Positives = 42/110 (38%), Gaps = 2/110 (1%)
Frame = -2
Query: 650 SRIIYLLNNKTI*EWRDVQHVEKGGFRSSNLVTGLQDVYIVDDFNSTLEILVGI--ERAW 477
+R+I + K I + ++ H + N GL +V DF E +R
Sbjct: 140 NRLIDYMVQKGITPYANLYHYDLP-LALENKYKGLLGRQVVKDFADYAEFCYKTFGDRVK 198
Query: 476 KKEVFSGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNT 327
F+ PR V A + DNG APGR F N S P + T
Sbjct: 199 NWMTFNEPRVV--AALGYDNGIFAPGRCS--KAFGNCTEGNSATEPYIVT 244
>At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB
protein-related similar to ATP-dependent Clp protease,
ATP-binding subunit ClpB (GI:24982014) [Pseudomonas
putida KT2440]; similar to ClpB protein
(SP:Q9RA63){Thermus thermophilus}
Length = 422
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = -1
Query: 441 VGGNDD*QWGNGTRTSWSLDFVLQQFVTDLNEVSAGEHEANVALDVWQQ 295
+G + + +G+ T + +LQ + +S+GE E +D W Q
Sbjct: 329 IGSHFERCFGSETHLELDKEVILQILAASWSSLSSGEEEGRTIVDQWMQ 377
>At5g55730.1 68418.m06947 fasciclin-like arabinogalactan-protein
(FLA1) identical to
gi|13377776||AAK20857|13377775|gb|AF333970
Length = 424
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 430 IPAHNTGLGPEKTSFFQALSIPTKISRVLLKSS 528
+P + P+K +F L++PT S +LKS+
Sbjct: 235 LPKYKNLTAPKKEAFLDFLAVPTYYSMAMLKSN 267
>At5g12430.1 68418.m01461 DNAJ heat shock N-terminal
domain-containing protein similarity to
TETRATRICOPEPTIDE REPEAT PROTEIN 2 , human,
SWISSPROT:TTC2_HUMAN; contains Pfam profiles PF00226:
DnaJ domain, PF00515: TPR Domain
Length = 1165
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Frame = -3
Query: 706 NLARRSSGLMSRI-SGAKIVPESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTS 530
N+ R + S I +G+ PE+Y+ + PYE E + R +++ P +P +
Sbjct: 357 NIGREFAFAESAIPNGSNEAPEAYSPMDISPYEETE---VCREFSADIPPTAPNYLFDAE 413
Query: 529 LMISIVPLKSW*G*KEPGRKRSSLDRGRCCGRE 431
L+ + ++ G + + + G C E
Sbjct: 414 LVAATERMEINEGDEVNNYQAEEFNTGNCADHE 446
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/69 (24%), Positives = 36/69 (52%)
Frame = +2
Query: 158 ADNVGSQQMQQIRISLSGSSIVLMGKNTMMRKASKTTWTTIQPSRNCCHTSRATLASCSP 337
ADN+ S++ +Q ++ + SS+ +G K S +++ + C H+ + LA P
Sbjct: 811 ADNMDSEEGKQTCVNDTSSSLTKVGV-----KGSSNV-LSVERTGGCSHSDESDLAMAVP 864
Query: 338 AETSLRSVT 364
+E + +V+
Sbjct: 865 SEGCMENVS 873
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,624,334
Number of Sequences: 28952
Number of extensions: 386672
Number of successful extensions: 1189
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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