Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021941
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    31   0.20 
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    27   3.3  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    26   5.8  
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces...    26   5.8  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    25   7.7  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    25   7.7  

>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +2

Query: 296  ITEQLDLIIEKGFYAPRNN-VQNNPKQIENKQETDRDNREGKNVGSKIEPEASSASHQKV 472
            + +  + ++++   +  N    NN     N   T  +N E     S+IEPE  +AS + V
Sbjct: 1175 VADNSNALLKENISSQSNRKADNNGTPSVNNSFTTANNDECSKENSQIEPEGQTASREGV 1234

Query: 473  PDKPENTK 496
               P +T+
Sbjct: 1235 LSTPRSTR 1242


>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +2

Query: 293 LITEQLDLIIEKGFYAPRNNVQNNPKQIENKQETDRDNREGKNVGSKIEPEASSASHQKV 472
           L T + DL+  + + A  +  + + K +        DN+  +++ S   P+  SA  QKV
Sbjct: 531 LTTGRYDLVNSQMYVAESSTSELSEKDLTKPNLQSNDNKNSEDLESNTPPQKKSAL-QKV 589

Query: 473 PD 478
            D
Sbjct: 590 AD 591


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +2

Query: 341 PRNNVQNNPKQIENKQETDR-DNREGKNVGSKIEPEASSASH--QKVPDKPENTKTM 502
           P+ N+ NNP   ENK + D  DNR   N+    + E  S     + VP K +   +M
Sbjct: 131 PKPNI-NNPDN-ENKSKHDEFDNRYNININESYKNETKSNQRLGEDVPSKKKYPHSM 185


>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 491

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
 Frame = +2

Query: 278 NLQKKLITEQLDLIIEKGFYAPRNNVQNNPKQIENKQETDRDNREGKNV--GSKIEPEAS 451
           NLQ + I  ++  + ++ F  P NN++++PK  ++++  +    E + V   +   PE +
Sbjct: 4   NLQSESIPHEI--LPKEPFDLPMNNLKSSPKNKDSEKRINNSIAESEQVVDSALSNPETN 61

Query: 452 SASHQKVPDKPENTKTMFSIMKP 520
           +      P  P     +     P
Sbjct: 62  ANEDIIAPQLPSQNSEIIEKNSP 84


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +2

Query: 278 NLQKKLITEQLDLIIEKGFYAPRNN-VQNNPKQIENKQETDRDNREGKNVGSKIEPEASS 454
           ++ K ++ ++   I+  G     NN + N  + ++ K +T  D +E  NV SKI+  A +
Sbjct: 390 SVYKNVLLDRESYIMRLGNKISENNELLNENRVLKEKLQTYLDKKES-NVTSKIKSTAEN 448

Query: 455 AS 460
           +S
Sbjct: 449 SS 450


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 18/78 (23%), Positives = 31/78 (39%)
 Frame = +2

Query: 266 PDKYNLQKKLITEQLDLIIEKGFYAPRNNVQNNPKQIENKQETDRDNREGKNVGSKIEPE 445
           PD    +K+ +  +    +E+     R       K I  KQ       + +N    ++ E
Sbjct: 271 PDFEENRKQYLQNKSGSPVEETAILNRKPTLRKKKSIPKKQNESSSTIQKENT---VQQE 327

Query: 446 ASSASHQKVPDKPENTKT 499
           ASS+  + V   PE  +T
Sbjct: 328 ASSSEEEAVKSLPETQRT 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,041,278
Number of Sequences: 5004
Number of extensions: 68111
Number of successful extensions: 216
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)