Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021941
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0570 - 18614227-18614574,18614729-18614842,18614933-186151...    33   0.21 
05_03_0504 - 14766792-14767387,14768473-14768594,14770231-14771015     31   1.1  
04_04_1193 + 31634043-31634349,31634685-31634847,31635048-316366...    30   2.0  
05_04_0206 + 19034259-19035462,19036870-19037045,19037752-190379...    29   4.5  
02_05_1297 - 35536193-35536312,35536405-35536467,35536610-355369...    29   4.5  
01_06_1742 - 39585879-39585994,39586089-39586238,39586288-395863...    29   4.5  

>09_04_0570 -
           18614227-18614574,18614729-18614842,18614933-18615130,
           18615290-18615463,18615546-18615752,18615886-18616180,
           18616269-18617275
          Length = 780

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 353 VQNNPKQIENKQETDRDNREGKNVGSKIEPEASSASHQKVPDKPENTK 496
           V+N   + E   + +RD ++GK V S  EP   S S Q   +  E+T+
Sbjct: 4   VENMEGREERSTDVERDGKQGKEVESDYEPARDSVSSQGEANSNEDTR 51


>05_03_0504 - 14766792-14767387,14768473-14768594,14770231-14771015
          Length = 500

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/52 (30%), Positives = 30/52 (57%)
 Frame = -1

Query: 254 STTGMVIQNRFQMRMTKFTEMYRIHSVAFFAIITDLFYSFCLIFNTEKHKLN 99
           +T+G+VI+ R Q+ M  + +M+RI     F  + D  ++    FN E+ +L+
Sbjct: 168 ATSGVVIRRRLQLMM--YNDMFRIMFDRRFDSVDDPLFNKLKAFNAERSRLS 217


>04_04_1193 +
           31634043-31634349,31634685-31634847,31635048-31636622,
           31636653-31637541,31639401-31641266
          Length = 1599

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +3

Query: 90  IYLV*FMFLGVENETKRVKKVCDYGEKCYRMNPVHFREFSHPHLESILDNHAS 248
           +Y     +LG+ENET+R   +     KCY +  +H      P++   ++N  S
Sbjct: 684 VYCTHLRYLGLENETQRT--LPQALSKCYHLQVLHIGSCGTPNIPEEINNLVS 734


>05_04_0206 +
           19034259-19035462,19036870-19037045,19037752-19037975,
           19038133-19038914,19039337-19039494
          Length = 847

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +3

Query: 114 LGVENETKRVKKVCDYGEKCYRMNPVHFREFSHPHLE-SILDNHASGGITLSQINTISRR 290
           L V++E  + K+ C++  K Y      F ++ H H +    D     G   SQ +T++ +
Sbjct: 669 LSVQDEELKQKETCEHTRKEYMRKARAFEDWYHKHAQRRAFDVDPESGEGTSQKDTVAEK 728

Query: 291 N*SLNS 308
             ++ S
Sbjct: 729 RFAVES 734


>02_05_1297 -
           35536193-35536312,35536405-35536467,35536610-35536942,
           35537098-35537184,35538337-35538399,35538604-35538750,
           35538900-35539001,35539069-35539197,35539506-35539664,
           35539726-35539967,35540317-35540506,35540692-35540907,
           35541536-35541760
          Length = 691

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 678 KAHWLRACSHSAL*ALQRSNNLLHVESEVLWDD 580
           K  +LRA +  A+  + ++  +LHVE EV+ DD
Sbjct: 220 KTSFLRAMAMHAIDGIPKNCQILHVEQEVVGDD 252


>01_06_1742 - 39585879-39585994,39586089-39586238,39586288-39586375,
            39586479-39586640,39586753-39586877,39586992-39587030,
            39587290-39587476,39587643-39587713,39589371-39589564,
            39589656-39589767,39589899-39590082,39590177-39590503,
            39590780-39591061,39591148-39591621,39591730-39591813,
            39591850-39591939,39592024-39592247,39592503-39592600,
            39592679-39593169,39593249-39593520,39594266-39594522,
            39594672-39594890,39595007-39595167,39595249-39595441,
            39595528-39595633,39595947-39596121,39596404-39596556,
            39596663-39596794,39597120-39597184,39597754-39597819,
            39598433-39598511,39598587-39598767,39598864-39598976
          Length = 1889

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +2

Query: 365  PKQIENKQETDRDNREGKNVGSKI--EPEASSASHQKVPDKPENTK 496
            P ++E+ +E D  + + ++  S +  + E  S    ++P+KPE++K
Sbjct: 1732 PAEMESSEEEDGSDGQDESSSSMVSTDEEDESDEEDEIPEKPESSK 1777


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,653,940
Number of Sequences: 37544
Number of extensions: 391459
Number of successful extensions: 962
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)