Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021941
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22259| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   2e-05
SB_52003| Best HMM Match : BTB (HMM E-Value=1e-16)                     43   2e-04
SB_43018| Best HMM Match : Ank (HMM E-Value=2.6e-08)                   33   0.16 
SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     30   1.5  
SB_23890| Best HMM Match : Oxidored_q4 (HMM E-Value=1)                 29   3.5  
SB_53747| Best HMM Match : S1-P1_nuclease (HMM E-Value=2.9)            29   4.6  
SB_35651| Best HMM Match : NUMOD3 (HMM E-Value=3.2)                    28   8.0  
SB_19140| Best HMM Match : Cyclotide (HMM E-Value=2.8)                 28   8.0  
SB_10578| Best HMM Match : NUMOD3 (HMM E-Value=3.2)                    28   8.0  

>SB_22259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
 Frame = +3

Query: 123 ENETKRVKKVCDYGEKCYRMNPVHFREFSHP--HLESILDNHASGGITLSQINTISRRN 293
           +  + R KKVC YG KCY+ NP H + F HP  H +S   + ++   T S + +++ R+
Sbjct: 292 DEASDRKKKVCMYGSKCYQTNPDHMKNFLHPERHTKSTDSDRSADDNTTSNVFSLTARS 350


>SB_52003| Best HMM Match : BTB (HMM E-Value=1e-16)
          Length = 501

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +3

Query: 117 GVENETKRVKKVCDYGEKCYRMNPVHFREFSH 212
           G    +K  K +C YG KCYR NPVH  E+ H
Sbjct: 31  GKRKRSKDEKPLCKYGSKCYRKNPVHMEEYRH 62


>SB_43018| Best HMM Match : Ank (HMM E-Value=2.6e-08)
          Length = 169

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 12/53 (22%), Positives = 32/53 (60%)
 Frame = +2

Query: 335 YAPRNNVQNNPKQIENKQETDRDNREGKNVGSKIEPEASSASHQKVPDKPENT 493
           Y  R+N Q++P+ +  ++ + +D+ +G+ +  +  P+A++ S+  + D   +T
Sbjct: 36  YRNRHNSQSSPETVNPRRNSSKDSVQGRKLPKREAPKATTTSYISIKDPLRST 88


>SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1346

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +2

Query: 338 APRNNVQNNPKQIENKQETDRDNREGKNVGSKIEPEASSASHQKVPDKPENTKTMF 505
           APR   +   + + N+QE   D     N   K  P+ SS+S++K   KP+N +  F
Sbjct: 248 APRRGSKRK-RGVNNQQEKRTDELSHNNKEKKEYPKVSSSSYRK---KPDNARKQF 299


>SB_23890| Best HMM Match : Oxidored_q4 (HMM E-Value=1)
          Length = 317

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
 Frame = +2

Query: 314 LIIEKGFYAPRNNVQNNPKQIENKQETDRDNRE--GKNVGSKIEPEASS---ASHQKVPD 478
           +I+ +    PRN     P  +EN+ + + DN E  G N   +   +AS    ASH     
Sbjct: 217 MIVVRCHINPRNKTDELPSDLENENDLEIDNIETQGANTDKESTGKASEQDIASHNTRLS 276

Query: 479 KPENTK 496
             EN K
Sbjct: 277 SSENPK 282


>SB_53747| Best HMM Match : S1-P1_nuclease (HMM E-Value=2.9)
          Length = 554

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 144 KKVCDYGEKCYRMNPVHFREFSHPHL-ESILDNHASGGITLSQINTI 281
           KK    G +  R +P H  +   P+    + D HA  G +L  +NT+
Sbjct: 332 KKTRPAGNEAGRSSPTHITQTKIPYACFGVFDGHAGEGASLMAVNTL 378


>SB_35651| Best HMM Match : NUMOD3 (HMM E-Value=3.2)
          Length = 228

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/45 (22%), Positives = 26/45 (57%)
 Frame = +2

Query: 341 PRNNVQNNPKQIENKQETDRDNREGKNVGSKIEPEASSASHQKVP 475
           P+++ +N+P + +   +  +++++ K+  SK   +  S +H K P
Sbjct: 112 PKDHPKNHPSKDQKGSKETKEHKDSKDKDSKEHKDQKSHNHHKDP 156


>SB_19140| Best HMM Match : Cyclotide (HMM E-Value=2.8)
          Length = 168

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 579 YRPIIPPTRRVEDYLNVVRPKGPNGCKHEASAPF 680
           YRP+I  +R+ +D+ N+     PN  +     PF
Sbjct: 64  YRPLITHSRKNDDHYNIRGQTDPNSIQRNLVLPF 97


>SB_10578| Best HMM Match : NUMOD3 (HMM E-Value=3.2)
          Length = 379

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/45 (22%), Positives = 26/45 (57%)
 Frame = +2

Query: 341 PRNNVQNNPKQIENKQETDRDNREGKNVGSKIEPEASSASHQKVP 475
           P+++ +N+P + +   +  +++++ K+  SK   +  S +H K P
Sbjct: 53  PKDHPKNHPSKDQKGSKETKEHKDSKDKDSKEHKDQKSHNHHKDP 97


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,194,298
Number of Sequences: 59808
Number of extensions: 477069
Number of successful extensions: 1330
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)