Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021941
         (680 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    26   0.96 
DQ370037-1|ABD18598.1|  121|Anopheles gambiae putative TIL domai...    24   3.9  
AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.         23   8.9  

>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 26.2 bits (55), Expect = 0.96
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 162 GEKCYRMNPVHFREFSHPHLESILDNH 242
           GEKCYR     +   S  HLES L  H
Sbjct: 351 GEKCYRCEYCPYASISMRHLESHLLLH 377


>DQ370037-1|ABD18598.1|  121|Anopheles gambiae putative TIL domain
           polypeptide protein.
          Length = 121

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +2

Query: 374 IENKQETDRDNREGKNVGSKIEPEASSASHQKVP 475
           I + ++TD++   G+ V +  EP  + A+ ++ P
Sbjct: 19  IASAEKTDQEAEHGETVPATPEPSTTEATEEESP 52


>AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.
          Length = 437

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 331 ILCSSEQCTKQPKTN*EQTRNRQGQPRREK 420
           +  +S+Q   +P      TRN++ QP R++
Sbjct: 284 VYANSQQQMMKPMLQRHLTRNKRSQPARKR 313


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 757,246
Number of Sequences: 2352
Number of extensions: 16891
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68577420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)