Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021941
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82275-1|CAB05237.2|  472|Caenorhabditis elegans Hypothetical pr...    36   0.035
Z71181-3|CAA94896.1|  493|Caenorhabditis elegans Hypothetical pr...    35   0.047
AF016674-3|AAB66128.1|  558|Caenorhabditis elegans Hypothetical ...    31   0.58 
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U47144-1|AAB52616.2|  448|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    29   3.1  
AC024211-1|AAF36065.1|  252|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z98853-1|CAB57901.1|  262|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U41534-6|AAB47598.1|  375|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF077544-4|ABD94098.1|  348|Caenorhabditis elegans Hypothetical ...    28   7.1  
AF077544-3|AAK39242.3|  458|Caenorhabditis elegans Hypothetical ...    28   7.1  
Z68214-4|CAA92447.1|  397|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AF125956-5|AAD14722.2|  353|Caenorhabditis elegans Serpentine re...    27   9.4  
AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium bind...    27   9.4  
AF078792-2|AAC26946.1|  512|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z82275-1|CAB05237.2|  472|Caenorhabditis elegans Hypothetical
           protein K01G12.3 protein.
          Length = 472

 Score = 35.5 bits (78), Expect = 0.035
 Identities = 21/66 (31%), Positives = 33/66 (50%)
 Frame = +2

Query: 290 KLITEQLDLIIEKGFYAPRNNVQNNPKQIENKQETDRDNREGKNVGSKIEPEASSASHQK 469
           ++IT  LD +I + +Y   N   +N   + N QE+DR+N  G   G K E   +  S +K
Sbjct: 348 QVITTLLDQVIRQNYYLNLNIPADN-LPLRNPQESDRNNVNGNADGGKNEKHGAEDSSKK 406

Query: 470 VPDKPE 487
              + E
Sbjct: 407 DEQRDE 412


>Z71181-3|CAA94896.1|  493|Caenorhabditis elegans Hypothetical
           protein K07C5.3 protein.
          Length = 493

 Score = 35.1 bits (77), Expect = 0.047
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +3

Query: 147 KVCDYGEKCYRMNPVHFREFSHP 215
           + C YGEKCYR N  H   F HP
Sbjct: 469 EACRYGEKCYRKNKDHLDSFWHP 491


>AF016674-3|AAB66128.1|  558|Caenorhabditis elegans Hypothetical
           protein C03H5.5 protein.
          Length = 558

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
 Frame = +2

Query: 281 LQKKLITEQLDLIIEKGFYAPRNNVQNNPKQIENKQETDRDNREGKNVGSKIEPEASSAS 460
           L +K+   + DL  EK     R   +   K + +KQ    +  + +N+G  I PE  + S
Sbjct: 10  LHQKIKKLKEDLAREKEL---RKEAERQLKVLLDKQTGSLEITKPENIGLFITPEPQT-S 65

Query: 461 HQKVPD---KPENTKTMFSIMKPN*D 529
            + + D   KP N+KTM  +  PN D
Sbjct: 66  RRPIKDNSAKPANSKTMSELPTPNED 91


>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical protein
            F45E4.4 protein.
          Length = 2361

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 356  QNNP-KQIENKQETDRDNREGKNVGSKIEPEASSASHQKVPDKPENTKTMF 505
            +N P KQ ++   T  D+R  + V  + E EA S   QKV +KP   +T+F
Sbjct: 1756 ENVPEKQTDDFDFTYSDSRFAEIVQMQEEEEAGSLQKQKVDEKPRMWETVF 1806


>U47144-1|AAB52616.2|  448|Caenorhabditis elegans Hypothetical
           protein ZC53.1 protein.
          Length = 448

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = +2

Query: 317 IIEKGFYAPRNNVQNNPKQIENKQETDRDNREGKNVGSKIEPEASSASHQKVPDKPE 487
           I+ +GF  P  +  +NP    + Q T R    G ++G     +  S++ +   ++PE
Sbjct: 12  ILNRGFREPHPSEVSNPTMRSSSQTTTRGTGSGISIGGNTAFDQGSSTGRTTSNQPE 68


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
            protein C08G9.2 protein.
          Length = 2224

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 404  CPCLFLVCSQFVLGCFVHCSEEHRIP 327
            CP L+  CS    GC + C++ HR P
Sbjct: 1114 CPSLYKCCSD---GCVMRCTQPHRAP 1136


>AC024211-1|AAF36065.1|  252|Caenorhabditis elegans Hypothetical
           protein Y76B12C.4 protein.
          Length = 252

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
 Frame = +2

Query: 263 IPDKYNLQKKLITEQLDLIIEKGFYAPRNNVQNNPKQIENKQETDRDNREGKNVGSKIEP 442
           +P K     KLI E  +   EK         +   ++   K E D++ +E +    K E 
Sbjct: 46  VPSKPREGPKLIDEFEEKESEKEAAEKEKEKEKEKEKTHEKNEADKEEKEAEKEEEKEEK 105

Query: 443 EASSASHQKVPDKP-ENTKT 499
                + +K  +K  E TKT
Sbjct: 106 PPKEVTEEKEKEKEREKTKT 125


>Z98853-1|CAB57901.1|  262|Caenorhabditis elegans Hypothetical
           protein R08A2.1 protein.
          Length = 262

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +2

Query: 344 RNNVQNNPKQIENKQETDRDNREGKNVGSKIEPEASSASHQKVPDKPENTKTMFSIMKPN 523
           +++  N+  + E   E D  N + K    K   +  S S Q  P  P+NT T+ +   PN
Sbjct: 30  KSSKSNSEAEDERDDEDDSGNDKKKKKKGK---KGKSDSSQTGPKPPKNTNTLAATQDPN 86


>U41534-6|AAB47598.1|  375|Caenorhabditis elegans Hypothetical
           protein C16A3.4 protein.
          Length = 375

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +2

Query: 320 IEKGFYAPRNNVQNNPKQIENKQETDRDNREGKNVGSKIEPEASSASHQKVPDKPENTKT 499
           ++KG   PR   +N PK+ E+ +E + D  +  + G + + E          D    T  
Sbjct: 106 VKKGPKQPRKKPENLPKKPESLKEPENDEDDDSS-GWETDDEEEGVEELNEDDALPVTSC 164

Query: 500 MFSIM-KPN*DAYR 538
           +F    KPN D  R
Sbjct: 165 LFCPQTKPNMDEMR 178


>AF077544-4|ABD94098.1|  348|Caenorhabditis elegans Hypothetical
           protein H22K11.4b protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +1

Query: 442 GGKFRKSSKSTGQT*KYKNNVFNNEAKLRRLSIEGELLKRNP 567
           G K+R   K++G+T     ++ +N+ KLR LS++ +LL   P
Sbjct: 216 GQKWR-DDKTSGETLGEFISIRDNQKKLRELSLQRQLLSMGP 256


>AF077544-3|AAK39242.3|  458|Caenorhabditis elegans Hypothetical
           protein H22K11.4a protein.
          Length = 458

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +1

Query: 442 GGKFRKSSKSTGQT*KYKNNVFNNEAKLRRLSIEGELLKRNP 567
           G K+R   K++G+T     ++ +N+ KLR LS++ +LL   P
Sbjct: 326 GQKWR-DDKTSGETLGEFISIRDNQKKLRELSLQRQLLSMGP 366


>Z68214-4|CAA92447.1|  397|Caenorhabditis elegans Hypothetical
           protein C10C5.4 protein.
          Length = 397

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 546 GVVKEKSSYSDYRPIIPPTR 605
           GV  E S +SDY+P+ P TR
Sbjct: 296 GVTYEFSQHSDYKPVSPHTR 315


>AF125956-5|AAD14722.2|  353|Caenorhabditis elegans Serpentine
           receptor, class h protein80 protein.
          Length = 353

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -1

Query: 182 HSVAFFAIITDLFYSF---CLIFNTEKHKLN 99
           H++  FA I   FYSF   C++F T KH  N
Sbjct: 30  HTMHIFAGIAIPFYSFGFHCILFKTPKHMNN 60


>AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform d protein.
          Length = 679

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +2

Query: 260 PIPDKYNLQKKLITEQLDLIIEKGFYAPRNNVQNNPKQIENKQETD 397
           P P K    ++ +T   +L++E+  Y   N  + NPK+ ++ +  D
Sbjct: 618 PKPSKRTTTRRPMTASKELVVEEIIYEDENGNRMNPKKRKSGKADD 663


>AF078792-2|AAC26946.1|  512|Caenorhabditis elegans Hypothetical
           protein Y40D12A.2 protein.
          Length = 512

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 278 NLQKKLITEQLDLIIEKGFYAPRNNVQNNP 367
           NL KK+I E   ++  K FY P N++Q  P
Sbjct: 298 NLYKKIIGES-PVLKNKYFYPPSNDIQGQP 326


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,816,629
Number of Sequences: 27780
Number of extensions: 381747
Number of successful extensions: 1204
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)