Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021941
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    27   0.22 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   1.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   1.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.7  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   4.7  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 442 GGKFRKSSKSTGQT*KYKNNVFNNEAKLRRLSIEGELLKRNPVIQII 582
           GGK +  SK      K K  + N +   R L  E +L+KR+P++ I+
Sbjct: 111 GGKHKFISK------KIKKTMENKDITKRPLPNESQLIKRHPIVTIM 151


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 350 NVQNNPKQIENKQETDRDNREGKNVGSKIEPEASSASHQKVPDKPEN 490
           N QN+ +Q +NKQ  +R N + K  G++      + + Q    + +N
Sbjct: 458 NRQNDNRQNDNKQNGNRQN-DNKQNGNRQNDNKQNGNRQNGNKQNDN 503



 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 347 NNVQNNPKQIENKQETDRDNREGKN 421
           +N QN+ KQ  N+Q  ++ N   +N
Sbjct: 462 DNRQNDNKQNGNRQNDNKQNGNRQN 486


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 629 NVQIIFYTSSRRYYG 585
           N   IFYT+S++YYG
Sbjct: 198 NSSEIFYTTSQQYYG 212


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 260  GNSTTGMVIQNRFQMRMTKFTEMYRIH 180
            G+ T G V Q + + RM K+ ++  IH
Sbjct: 1078 GSWTAGTVSQQKQKRRMVKYGKLVMIH 1104


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/43 (20%), Positives = 25/43 (58%)
 Frame = +1

Query: 292  IDH*TARSYNRKGILCSSEQCTKQPKTN*EQTRNRQGQPRREK 420
            +DH + ++  ++      +Q  +QP+   +Q + +Q QP++++
Sbjct: 1493 VDHSSQKTQQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQ 1535


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 521 LASLLKTLFLYFQVCPVLFDDLRNLPP 441
           L SLL    +Y  VC  + + ++ LPP
Sbjct: 466 LGSLLNPSHMYRAVCGRIENTIQGLPP 492


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,446
Number of Sequences: 438
Number of extensions: 5074
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)