Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021941
(680 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g19870.1 68414.m02492 calmodulin-binding family protein conta... 33 0.13
At5g40450.1 68418.m04905 expressed protein 29 2.2
At1g02670.1 68414.m00217 DNA repair protein, putative similar to... 29 2.2
At5g05740.2 68418.m00632 peptidase M50 family protein / sterol-r... 29 2.8
At5g05740.1 68418.m00631 peptidase M50 family protein / sterol-r... 29 2.8
At2g36420.1 68415.m04471 expressed protein 29 2.8
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso... 29 3.8
At3g48840.1 68416.m05334 RNA recognition motif (RRM)-containing ... 28 5.0
At3g03680.1 68416.m00371 C2 domain-containing protein contains I... 28 5.0
At4g35940.1 68417.m05113 expressed protein 27 8.7
At3g42910.1 68416.m04500 expressed protein ; expression supporte... 27 8.7
At2g32430.1 68415.m03962 galactosyltransferase family protein co... 27 8.7
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 27 8.7
At1g15210.1 68414.m01818 ABC transporter family protein Similar ... 27 8.7
>At1g19870.1 68414.m02492 calmodulin-binding family protein contains
Pfam profile: PF00612 IQ calmodulin-binding motif
Length = 794
Score = 33.5 bits (73), Expect = 0.13
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = +2
Query: 245 QWWNYPIPDKYNLQKKLITEQLDLIIEKGF-YAPRNNVQNNPKQIENKQETDRDNREGKN 421
+W + P P+K + + L TE+ +L + +P+ + N+ +ENK ETD + E
Sbjct: 338 RWMSVPKPEKTS-KANLTTEEQNLEETQNVKISPQADFVNSDSTVENKTETDMPSYEASK 396
Query: 422 VGSKIEPEASSASHQKVPDKPENTKTMF 505
V + E S D PE + ++
Sbjct: 397 VEGQ-NVELSETEKMSQYDSPEASAEVY 423
>At5g40450.1 68418.m04905 expressed protein
Length = 2910
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 371 QIENKQETDRDNREGKNVGSKIEPEASSASHQKVPDKPENTKTMFSIMK 517
++ N+Q+ + N SKIE E QK ++ ENTK +FS++K
Sbjct: 2767 EVPNQQKREITNEVPSLENSKIEEEL-----QKKDEESENTKDLFSVVK 2810
>At1g02670.1 68414.m00217 DNA repair protein, putative similar to
SP|P79051 DNA repair protein rhp16 (RAD16 homolog)
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 678
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +2
Query: 344 RNNVQNNPKQIENKQETDRDNREGKNVGSKIEPEASSASHQKVPDKPENTKTMFSIMK 517
+N + + Q EN +E + + + +VG +++ E ++ + P P NTK + IMK
Sbjct: 46 KNAILPSSSQDENLKEEEVPD-DDDSVGGEVQGEVNANDYIPNPAAPANTKRKWQIMK 102
>At5g05740.2 68418.m00632 peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2
protease family protein contains Pfam PF02163:
Sterol-regulatory element binding protein (SREBP) site 2
protease
Length = 527
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Frame = +2
Query: 311 DLIIEKGFYAPRNNVQNNPKQIENKQETDRDNREGKNVG-----SKIEPEASSASH--QK 469
DL +E+ F V+ Q E + D DN+EGK +KI E +S S +
Sbjct: 49 DLKLERVFRKRETLVRVTETQTEPEGNDDEDNKEGKESSADDPPTKIPTELNSQSTVVNE 108
Query: 470 VPDKPENTKTMFS 508
P E K FS
Sbjct: 109 APGNEEENKAQFS 121
>At5g05740.1 68418.m00631 peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2
protease family protein contains Pfam PF02163:
Sterol-regulatory element binding protein (SREBP) site 2
protease
Length = 556
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Frame = +2
Query: 311 DLIIEKGFYAPRNNVQNNPKQIENKQETDRDNREGKNVG-----SKIEPEASSASH--QK 469
DL +E+ F V+ Q E + D DN+EGK +KI E +S S +
Sbjct: 49 DLKLERVFRKRETLVRVTETQTEPEGNDDEDNKEGKESSADDPPTKIPTELNSQSTVVNE 108
Query: 470 VPDKPENTKTMFS 508
P E K FS
Sbjct: 109 APGNEEENKAQFS 121
>At2g36420.1 68415.m04471 expressed protein
Length = 439
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 377 ENKQETDRDNREGKNVGSKIEPEASSASH-QKVPDKPENTKTMFSIMK 517
E+K+E D++ +V +E E H Q PD P N F I++
Sbjct: 240 EDKEEEDKEQCSPVSVLDPLEEEEEDEDHHQHEPDPPNNLSCSFEIVQ 287
>At4g37820.1 68417.m05351 expressed protein Kaposi's
sarcoma-associated herpes-like virus ORF73gene, Kaposi's
sarcoma-associated herpesvirus, U52064
Length = 532
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +2
Query: 335 YAPRNNVQNNPKQIENKQETDRDNREGKNVGSKIEPEASSASHQKVPDKPENTK 496
Y N ++ +++++ +E + GKN E +ASS+ + +KPE K
Sbjct: 290 YQQTKNEEDEKEKVQSSEEESKVKESGKN-----EKDASSSQDESKEEKPERKK 338
>At3g48840.1 68416.m05334 RNA recognition motif (RRM)-containing
protein
Length = 144
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Frame = +2
Query: 257 YPIPDKYNLQKKLITEQLDLIIEKGFYAPRNNVQN--NPKQIENKQ----ETDRDNREGK 418
YP+ KYNL +KL E D + E+ ++++N K+I+ KQ ET+ N+E +
Sbjct: 76 YPLRPKYNLAEKLWYE--DYLREESLLIEADDLENKQKKKKIKEKQINVTETNLHNKENQ 133
>At3g03680.1 68416.m00371 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1017
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +2
Query: 368 KQIENKQETDRDNREGKNVGSKIE---PEASSASHQKVPDKPENTK 496
K + K+ET+ E K G K E P+ + +K PD P +TK
Sbjct: 163 KAEDGKKETEAAKTEEKKEGDKKEEEKPKEEAKPDEKKPDAPPDTK 208
>At4g35940.1 68417.m05113 expressed protein
Length = 451
Score = 27.5 bits (58), Expect = 8.7
Identities = 23/80 (28%), Positives = 38/80 (47%)
Frame = +2
Query: 368 KQIENKQETDRDNREGKNVGSKIEPEASSASHQKVPDKPENTKTMFSIMKPN*DAYR*RG 547
K+ + K+E R REGK VGS+ SH++ + +F +K + +
Sbjct: 57 KEKKEKKEKKRKEREGKEVGSE------KRSHKRRRKEDGAKVDLFHKLKESEVNCLEKS 110
Query: 548 SC*REIQLFRLSSHNTSDST 607
S E +L + +S N+ DST
Sbjct: 111 SLTVERELLQSTSQNSCDST 130
>At3g42910.1 68416.m04500 expressed protein ; expression supported
by MPSS
Length = 649
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +3
Query: 324 KRDSMLLGTMYKTTQNKLRTNKKQTG--TTEKGKMLGPKLNRRQVPQVIKK 470
KR+++ G + K R K TG + E GK GP N ++VP VI+K
Sbjct: 133 KRNAISKGGRGRKASKKGRLPKNLTGLVSDENGKD-GPANNGKEVPAVIRK 182
>At2g32430.1 68415.m03962 galactosyltransferase family protein
contains Pfam profile: PF01762 galactosyltransferase
Length = 409
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 417 FPSRLSLSVSCLFSICFGLFC 355
FPSR +S F +CFG FC
Sbjct: 10 FPSRSLVSKKWTFLLCFGSFC 30
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 347 NNVQNNPKQIENKQETDRDNREGKNVGSKIEPEASSASHQKVPDK 481
+ V+ P+++ N E + N+E K + E E+ + VP+K
Sbjct: 39 HEVEEVPQEVTNGVEEELSNKEKKKKRKREEKESEKNKKKDVPEK 83
>At1g15210.1 68414.m01818 ABC transporter family protein Similar to
gb|Z70524 GI:1514643 PDR5-like ABC transporter from
Spirodela polyrrhiza and is a member of the PF|00005 ABC
transporter family. ESTs gb|N97039 and gb|T43169 come
from this gene
Length = 1442
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = +2
Query: 245 QWWNYPIPDKYNLQKKLITEQLDLIIEKGFY---APRNNVQN 361
QWW Y YNL + + T L+I F+ R+NVQ+
Sbjct: 1174 QWWTYWRSPDYNLVRFIFTLATSLMIGSVFWQIGGKRSNVQD 1215
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,636,435
Number of Sequences: 28952
Number of extensions: 343085
Number of successful extensions: 975
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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