Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021940
         (748 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    24   1.1  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    24   1.1  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    24   1.1  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    22   4.5  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    22   6.0  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   6.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   7.9  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 732 ASWFPTNSYRIYIHSHHYQE 673
           AS  PTNS   Y H H Y+E
Sbjct: 148 ASSTPTNSCMEYQHLHRYKE 167


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 732 ASWFPTNSYRIYIHSHHYQE 673
           AS  PTNS   Y H H Y+E
Sbjct: 148 ASSTPTNSCMEYQHLHRYKE 167


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 732 ASWFPTNSYRIYIHSHHYQE 673
           AS  PTNS   Y H H Y+E
Sbjct: 148 ASSTPTNSCMEYQHLHRYKE 167


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/17 (35%), Positives = 15/17 (88%)
 Frame = -2

Query: 471 VQKVQSPIHQISKQVVH 421
           V+K+++ +HQ++ +V+H
Sbjct: 502 VEKLETLVHQLNTEVLH 518


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -2

Query: 441 ISKQVVHPNDHRYKLYFFLDHYPIRLLKLAAVERLCHLLFESQ 313
           I+KQ++      Y+LY +     I +L+       C L++E Q
Sbjct: 534 ITKQLIFMIFVTYQLYCWSSFLKISVLQSLWASPTCDLMYEFQ 576


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 670 PQVSICPLISCQAFGTRF 617
           P V+ C L+SC+ F T +
Sbjct: 11  PGVNRCKLLSCKDFDTLY 28


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 99  TSFCKNGNGK 128
           T FC+NGN K
Sbjct: 695 TCFCENGNNK 704


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,193
Number of Sequences: 336
Number of extensions: 4346
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)