Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021940
(748 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 96 5e-21
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom... 29 0.93
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po... 27 2.8
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar... 26 5.0
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 26 6.6
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 26 6.6
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1... 26 6.6
SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy... 25 8.7
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 25 8.7
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 25 8.7
SPAC5H10.05c |||FAD binding oxidoreductasde |Schizosaccharomyces... 25 8.7
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni... 25 8.7
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 95.9 bits (228), Expect = 5e-21
Identities = 56/157 (35%), Positives = 78/157 (49%), Gaps = 2/157 (1%)
Frame = +3
Query: 282 EVGATTELRDVGFQTIDGKDVQXXXXXXXXXXNDPKKNTVCIYGHLDVQPALKSDGWETE 461
++GA E RD+G+ +DG+DV NDP K TV IY H DVQPA DGW T+
Sbjct: 53 KLGAKMEKRDIGYHQMDGQDVPLPPIVLGQYGNDPSKKTVLIYNHFDVQPASLEDGWSTD 112
Query: 462 PFEL-VERNEKLYGRGSLMIKDLYLVGCTPSMPIRALVLSC-LSI*SSFSNVWRNLVPKA 635
PF L V+ +++GRG+ K + + + L + +++ F +
Sbjct: 113 PFTLTVDNKGRMFGRGATDDKGPLIGWISAIEAHKELGIDFPVNLLMCFEGMEEYGSEGL 172
Query: 636 *QLINGQIET*GILDSGDYVCISDNYWLGTTKPCITY 746
LI + E D VCISD YWLGT KP +TY
Sbjct: 173 EDLIRAEAEK--YFAKADCVCISDTYWLGTKKPVLTY 207
Score = 60.1 bits (139), Expect = 3e-10
Identities = 26/43 (60%), Positives = 31/43 (72%)
Frame = +2
Query: 509 TDDKGPVLGWLHTINAYKGTGAELPVNLKFIFECMEESGSEGL 637
TDDKGP++GW+ I A+K G + PVNL FE MEE GSEGL
Sbjct: 130 TDDKGPLIGWISAIEAHKELGIDFPVNLLMCFEGMEEYGSEGL 172
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +1
Query: 130 TLPEIFKYVDQNKDSYKQLLKEAVAIPSVSCDVKYRADCIRM 255
+L ++++ +D+ KD + L AV+IPSVS DV R + M
Sbjct: 2 SLDKLYEVIDKKKDEFVTRLSRAVSIPSVSADVTLRPKVVEM 43
>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 28.7 bits (61), Expect = 0.93
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -2
Query: 516 SSVNLVHIIFHCAQLVQKVQSPIHQISKQVVHPNDHRYKL 397
S VNL F ++L+Q++QS + I + N+H Y++
Sbjct: 39 SDVNLSSFAFIFSELIQRIQSQVSGIQEFEEKLNEHGYRV 78
>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 596
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +3
Query: 405 IYGHLDVQPALKS--DGWETEPFELVERNEKLYGRGS 509
+ GH DV P ++ D W PF N +Y RG+
Sbjct: 194 LMGHQDVVPVNQASLDRWYFPPFSATYHNGHVYSRGA 230
>SPBC19C7.08c |||leucine carboxyl
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 681
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 432 QVVHPNDHRYKLYFFLDHYPIR 367
++V P D + YFFL HY I+
Sbjct: 295 EMVEPFDEWEEFYFFLQHYSIQ 316
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 521 GPVLGWL-HTINAYKGTGAELPVNLKFIFECMEES 622
GP L ++ TIN Y+GTG L +LK + + E+S
Sbjct: 401 GPYLVFMASTINGYEGTGRSL--SLKLLQQLREQS 433
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1136
Score = 25.8 bits (54), Expect = 6.6
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +1
Query: 7 CIFNTLIKLPATKQLVPFFPAYHQHYSVSSKQVSAKMATE-KTLPEIFKYVDQNKDSYKQ 183
C NT+ L + + FF A + S Q+S AT +L IF D D +
Sbjct: 755 CNLNTMEALASVNTALQFFSALNYSECFSESQISPLHATVISSLSAIFIRDDTENDLVTE 814
Query: 184 LLKE 195
L+++
Sbjct: 815 LVEK 818
>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 6.6
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Frame = +2
Query: 497 WTRFTDDKGPVL--GWLHTINAYKGTGAELPVNLKFIFECMEESGSEGLTA 643
W D PV+ W+HT A LP+ +I ME G G T+
Sbjct: 314 WDHSIIDAAPVVTFNWVHTFRLRIYGPAVLPMLALYIVNMMEAIGDIGATS 364
>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 482
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 438 SKQVVHPNDHRYKLYFFLDHYPIRLLKLAAVERL-CHLLFESQH 310
SK+ VHPNDH D +P ++ +A+V ++ HLL +H
Sbjct: 141 SKKPVHPNDHVNMSQSSNDTFP-TVMHIASVLQIHTHLLPAMKH 183
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +3
Query: 243 LHPYV-HWMQDKLKEVGATTELRDVGFQ 323
L P V +W+QDKLK T R+ G Q
Sbjct: 184 LQPNVDNWLQDKLKHYLTTCLCRETGVQ 211
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -2
Query: 477 QLVQKVQSPIHQISKQVVHPNDHRYKLYFFLDHYPIRLLKLAA 349
++VQK S +H+++K++ H +L F Y + LL++ A
Sbjct: 538 EIVQKSLSVLHKVTKKIDKKAQHLQQLNAFQLLYSLVLLQVYA 580
>SPAC5H10.05c |||FAD binding oxidoreductasde |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 196
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 495 YGRGSLMIKDLYLVGCTPSMPIRA 566
YG+G L+ + Y++ CT + P A
Sbjct: 107 YGKGGLLHEHRYMISCTWNAPAAA 130
>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 384 PKKNTVCIYGHLDVQPALKSDGWETEPFELVERNEKL 494
P + I DV+P LKS + P E R EKL
Sbjct: 311 PLLEFIAIMDIKDVRPVLKSYQGKNIPLEYARREEKL 347
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,331,070
Number of Sequences: 5004
Number of extensions: 71923
Number of successful extensions: 220
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -