Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021940
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0488 - 6419731-6420843                                           29   3.9  
03_02_0310 + 7315185-7316820,7318332-7318879                           28   6.9  
02_02_0556 - 11444512-11445577,11445730-11446007                       28   6.9  
03_03_0267 + 16041974-16042549                                         28   9.1  

>04_01_0488 - 6419731-6420843
          Length = 370

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 269 LHPVNIRMQSARYFTSHETDGMATASFNNC 180
           LHPV +R+++A +F S   DG+   +  NC
Sbjct: 91  LHPV-VRLKNAAHFVSASCDGILILNMTNC 119


>03_02_0310 + 7315185-7316820,7318332-7318879
          Length = 727

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 523 TCTWLAAHHQCL*GHWC*AACQFE 594
           TCTW+     C  GHWC  AC  E
Sbjct: 421 TCTWVGCD-VC--GHWCHVACALE 441


>02_02_0556 - 11444512-11445577,11445730-11446007
          Length = 447

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 20/65 (30%), Positives = 28/65 (43%)
 Frame = -2

Query: 564 PL*ALMVCSQPSTGPLSSVNLVHIIFHCAQLVQKVQSPIHQISKQVVHPNDHRYKLYFFL 385
           PL  L        GP   VNL+   F  A L  K  +PI++  K   HPN +  + +  +
Sbjct: 80  PLVPLTPTDPMELGPTVGVNLISESFAFAYLSDKAVTPINKFFK---HPNGNIIEGFRII 136

Query: 384 DHYPI 370
              PI
Sbjct: 137 QDVPI 141


>03_03_0267 + 16041974-16042549
          Length = 191

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 506 FTDDKGPVLGWLHTINAYKGTGAELP 583
           FT D G   G LH++  + G GAELP
Sbjct: 61  FTYDGGDGDGELHSVGPWGGDGAELP 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,619,827
Number of Sequences: 37544
Number of extensions: 426341
Number of successful extensions: 998
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)