Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021940
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59218| Best HMM Match : M20_dimer (HMM E-Value=2)                   48   8e-06
SB_9197| Best HMM Match : ITAM (HMM E-Value=4.2)                       34   0.14 
SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.33 
SB_39672| Best HMM Match : Peptidase_M20 (HMM E-Value=9.9e-09)         31   0.75 
SB_56221| Best HMM Match : AOX (HMM E-Value=3.6)                       29   4.0  
SB_42534| Best HMM Match : DUF699 (HMM E-Value=0)                      29   4.0  
SB_6120| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.2  

>SB_59218| Best HMM Match : M20_dimer (HMM E-Value=2)
          Length = 233

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 18/20 (90%), Positives = 18/20 (90%)
 Frame = +3

Query: 687 DYVCISDNYWLGTTKPCITY 746
           DYVCISDNYWLG  KPCITY
Sbjct: 138 DYVCISDNYWLGKEKPCITY 157


>SB_9197| Best HMM Match : ITAM (HMM E-Value=4.2)
          Length = 75

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +3

Query: 390 KNTVCIYGHLDVQPALKSDGWET--EPFELVERNEKLYGRG 506
           ++TV +YGHLD QP  +  GW     P+     + KLYGRG
Sbjct: 15  RDTVLLYGHLDKQP--EFSGWRAGLGPWTPKYEDGKLYGRG 53


>SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2529

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
 Frame = +1

Query: 10   IFNTLIK-LPATKQLVPFFPAYHQHYSV-SSKQVSAKMATEKTLPEIFKYVDQNKDSYKQ 183
            IF  L K +  TK  VP   A  + + V SSK VS + AT  TLPE+ + +D   D+  +
Sbjct: 1653 IFQRLDKRVTKTKSSVPLLAALRRCFVVASSKDVSPRRATTVTLPEL-RAMDDLADAADR 1711

Query: 184  LLKEAVAIPSVSCD 225
             +   + I S   D
Sbjct: 1712 RVAHVLPIASSESD 1725


>SB_39672| Best HMM Match : Peptidase_M20 (HMM E-Value=9.9e-09)
          Length = 702

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = +3

Query: 405 IYGHLDVQPALKSDGWETEPFELVERNEKLYGRGSLMIKD 524
           I  HLDV PA  S  W+  PF+   ++  ++GRG+L +K+
Sbjct: 464 IASHLDVVPAPGS--WDVPPFDGRVKDGYIWGRGTLDVKN 501


>SB_56221| Best HMM Match : AOX (HMM E-Value=3.6)
          Length = 361

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +1

Query: 85  SVSSKQVSAKMATEKTLPEIFKYVDQNKDSYKQLLKEAVAIPSVSCD 225
           S SSK VS++ AT  TLPE+ + +D   D+  + +  A+ I S   D
Sbjct: 18  SRSSKDVSSRRATTVTLPEL-RAMDDLADAADRRVAHALPIASSESD 63


>SB_42534| Best HMM Match : DUF699 (HMM E-Value=0)
          Length = 739

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +2

Query: 521 GPVLGWLH-TINAYKGTGAELPVNLKFIFECMEESGSEGLTA 643
           GP L ++  TIN Y+GTG  L  +LK + +  ++S  +G+T+
Sbjct: 128 GPYLVFMSSTINGYEGTGRSL--SLKLLQQLRQQSVPQGVTS 167


>SB_6120| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +1

Query: 52  VPFFPAYHQHYSVSSKQVSAKMATEKTLPEIFKYVDQNKDSYKQLLKEAVAIPSVSCD 225
           +P  P+     S SSK VS + AT  TLPE+ + +D   D+  + +   + I S   D
Sbjct: 8   IPCRPSDVASSSRSSKDVSPRRATTVTLPEL-RAMDDLADAADRRVAHVLPIASSESD 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,110,601
Number of Sequences: 59808
Number of extensions: 500905
Number of successful extensions: 1357
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)