Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021940
(748 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93386-5|CAB07646.1| 473|Caenorhabditis elegans Hypothetical pr... 126 1e-29
AC024859-4|AAK29983.4| 472|Caenorhabditis elegans Hypothetical ... 102 3e-22
X69016-1|CAA48781.1| 549|Caenorhabditis elegans ced-4 protein. 29 2.6
U21324-2|AAX22294.1| 571|Caenorhabditis elegans Cell death abno... 29 2.6
U21324-1|AAA62564.1| 549|Caenorhabditis elegans Cell death abno... 29 2.6
Z66521-11|CAA91398.2| 471|Caenorhabditis elegans Hypothetical p... 29 4.6
AB031233-1|BAA92262.1| 605|Caenorhabditis elegans kinesin like ... 29 4.6
AF067945-16|AAC17675.1| 341|Caenorhabditis elegans Serpentine r... 28 8.1
>Z93386-5|CAB07646.1| 473|Caenorhabditis elegans Hypothetical
protein R11H6.1 protein.
Length = 473
Score = 126 bits (305), Expect = 1e-29
Identities = 70/166 (42%), Positives = 95/166 (57%), Gaps = 2/166 (1%)
Frame = +3
Query: 255 VHWMQDKLKEVGATTELRDVGFQTIDGKDVQXXXXXXXXXXNDPKKNTVCIYGHLDVQPA 434
VHWM++KL+ +G EL D+G Q ++GK V+ +D K T+ +YGHLDVQPA
Sbjct: 46 VHWMKEKLETIGTICELADLGTQELEGKTVKLPPVLLGTLGSDKNKKTLLVYGHLDVQPA 105
Query: 435 LKSDGWETEPFELVERNEKLYGRGSLMIKDLYLVGCTPSMPIRALVLSCLSI*SSFSNVW 614
KSDGW+TEPFELVE++ KL+GRGS K L C IRA + + + +
Sbjct: 106 AKSDGWDTEPFELVEKDGKLFGRGSSDDKGPVL--CW-FHAIRAAQKNGIDLPVNIKFCL 162
Query: 615 RNLVPKA*QLINGQI--ET*GILDSGDYVCISDNYWLGTTKPCITY 746
+ + + E L D+VCISD+YWLGT KPC+TY
Sbjct: 163 EGMEESGSVGLPELLEREKDRFLAGVDFVCISDSYWLGTKKPCLTY 208
Score = 60.1 bits (139), Expect = 2e-09
Identities = 27/43 (62%), Positives = 31/43 (72%)
Frame = +2
Query: 509 TDDKGPVLGWLHTINAYKGTGAELPVNLKFIFECMEESGSEGL 637
+DDKGPVL W H I A + G +LPVN+KF E MEESGS GL
Sbjct: 131 SDDKGPVLCWFHAIRAAQKNGIDLPVNIKFCLEGMEESGSVGL 173
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/41 (48%), Positives = 28/41 (68%)
Frame = +1
Query: 133 LPEIFKYVDQNKDSYKQLLKEAVAIPSVSCDVKYRADCIRM 255
L +F+ +D + D+ K+LL+EAVAI SVS D R + IRM
Sbjct: 5 LTNVFQQIDGDYDNLKELLREAVAIQSVSGDPSKRDETIRM 45
>AC024859-4|AAK29983.4| 472|Caenorhabditis elegans Hypothetical
protein Y71H2AM.11 protein.
Length = 472
Score = 102 bits (244), Expect = 3e-22
Identities = 62/164 (37%), Positives = 84/164 (51%), Gaps = 2/164 (1%)
Frame = +3
Query: 261 WMQDKLKEVGATTELRDVGFQTI-DGKDVQXXXXXXXXXXNDPKKNTVCIYGHLDVQPAL 437
W +D+LK +G T L ++G QT+ G+ + D K T+ IYGHLDVQPA
Sbjct: 47 WARDQLKTLGVETSLWELGQQTLPSGEQLPLPPAVFGVYGRDKSKKTLLIYGHLDVQPAE 106
Query: 438 KSDGWETEPFELVERNEKLYGRGSLMIKDLYLVGCTPSMPIRALVLSCLSI*SSFSNVWR 617
K DGW T PFEL E + KL+GRGS K + ++ L + L I F V
Sbjct: 107 KEDGWNTNPFELTEIDGKLFGRGSTDDKGPVIAWIAVLKVLQTLGID-LPINIKF--VLE 163
Query: 618 NLVPKA*Q-LINGQIET*GILDSGDYVCISDNYWLGTTKPCITY 746
+ + + L G + + + CISDNYWLG KPC+TY
Sbjct: 164 CMEESSSEGLDKGLEDNIDKISDVTFSCISDNYWLGRNKPCLTY 207
Score = 62.9 bits (146), Expect = 2e-10
Identities = 24/43 (55%), Positives = 32/43 (74%)
Frame = +2
Query: 509 TDDKGPVLGWLHTINAYKGTGAELPVNLKFIFECMEESGSEGL 637
TDDKGPV+ W+ + + G +LP+N+KF+ ECMEES SEGL
Sbjct: 131 TDDKGPVIAWIAVLKVLQTLGIDLPINIKFVLECMEESSSEGL 173
Score = 45.6 bits (103), Expect = 4e-05
Identities = 19/38 (50%), Positives = 27/38 (71%)
Frame = +1
Query: 142 IFKYVDQNKDSYKQLLKEAVAIPSVSCDVKYRADCIRM 255
+FK +D+ +D + LL+E+VAI SVS D R DC+RM
Sbjct: 7 VFKSIDERQDEFIDLLRESVAIQSVSADPARRGDCVRM 44
>X69016-1|CAA48781.1| 549|Caenorhabditis elegans ced-4 protein.
Length = 549
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -1
Query: 610 TFENELQIDRQLSTSALIGIDGVQPTKYRSFIISEPR 500
TFE Q++ +L + L+G++ + P Y+S ++ R
Sbjct: 344 TFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQR 380
>U21324-2|AAX22294.1| 571|Caenorhabditis elegans Cell death
abnormality protein4, isoform b protein.
Length = 571
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -1
Query: 610 TFENELQIDRQLSTSALIGIDGVQPTKYRSFIISEPR 500
TFE Q++ +L + L+G++ + P Y+S ++ R
Sbjct: 366 TFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQR 402
>U21324-1|AAA62564.1| 549|Caenorhabditis elegans Cell death
abnormality protein4, isoform a protein.
Length = 549
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -1
Query: 610 TFENELQIDRQLSTSALIGIDGVQPTKYRSFIISEPR 500
TFE Q++ +L + L+G++ + P Y+S ++ R
Sbjct: 344 TFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQR 380
>Z66521-11|CAA91398.2| 471|Caenorhabditis elegans Hypothetical
protein W02B12.7 protein.
Length = 471
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +1
Query: 70 YHQHYSVSSKQVSAKMATEKTLPEIFKYVDQNKDSYKQLLKEAVAIPSVSC 222
Y+ H + Q++ T+P++ + + K+ K L +E+ PS SC
Sbjct: 11 YNNHTNDLKHQIAQLERKTATIPKLENQLHKAKNQNKVLRRESALFPSASC 61
>AB031233-1|BAA92262.1| 605|Caenorhabditis elegans kinesin like
protein protein.
Length = 605
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +1
Query: 70 YHQHYSVSSKQVSAKMATEKTLPEIFKYVDQNKDSYKQLLKEAVAIPSVSC 222
Y+ H + Q++ T+P++ + + K+ K L +E+ PS SC
Sbjct: 145 YNNHTNDLKHQIAQLERKTATIPKLENQLHKAKNQNKVLRRESALFPSASC 195
>AF067945-16|AAC17675.1| 341|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 12 protein.
Length = 341
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 62 FLLIINIIQ*VPNKFLQKWQRKKH 133
FL+I+N+ + N+FL+ W KK+
Sbjct: 172 FLMILNLFALLTNQFLRTWNLKKY 195
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,256,854
Number of Sequences: 27780
Number of extensions: 393908
Number of successful extensions: 1032
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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