Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021940
         (748 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17830.1 68417.m02659 peptidase M20/M25/M40 family protein si...    31   0.81 
At1g48540.2 68414.m05428 leucine-rich repeat family protein            31   1.1  
At1g48540.1 68414.m05427 leucine-rich repeat family protein            31   1.1  
At1g62570.1 68414.m07059 flavin-containing monooxygenase family ...    29   4.3  
At2g28260.1 68415.m03430 cyclic nucleotide-regulated ion channel...    28   5.7  
At2g17530.1 68415.m02028 protein kinase family protein identical...    28   5.7  
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf...    28   7.6  
At1g75370.1 68414.m08754 SEC14 cytosolic factor, putative / phos...    28   7.6  
At5g13210.1 68418.m01516 expressed protein                             27   10.0 
At1g73080.1 68414.m08450 leucine-rich repeat transmembrane prote...    27   10.0 
At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pf...    27   10.0 
At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pf...    27   10.0 

>At4g17830.1 68417.m02659 peptidase M20/M25/M40 family protein
           similar to acetylornithine deacetylase
           (Acetylornithinase, AO; N-acetylornithinase, NAO)
           [Dictyostelium discoideum] SWISS-PROT:P54638
          Length = 440

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +3

Query: 414 HLDVQPALKSDGWETEPFELVERNEKLYGRGS 509
           H+DV  A   D WE +PF L    +KL GRG+
Sbjct: 101 HMDVVTA-NPDDWEFDPFSLSIDGDKLRGRGT 131


>At1g48540.2 68414.m05428 leucine-rich repeat family protein 
          Length = 1051

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +3

Query: 672 ILDSGDYVCISDNYWLGT 725
           I DSG+ VCISDN+W  T
Sbjct: 745 ISDSGEDVCISDNFWENT 762


>At1g48540.1 68414.m05427 leucine-rich repeat family protein 
          Length = 1063

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +3

Query: 672 ILDSGDYVCISDNYWLGT 725
           I DSG+ VCISDN+W  T
Sbjct: 745 ISDSGEDVCISDNFWENT 762


>At1g62570.1 68414.m07059 flavin-containing monooxygenase family
           protein / FMO family protein low similarity to
           flavin-containing monooxygenase FMO3 [Rattus norvegicus]
           GI:12006730; contains Pfam profile PF00743:
           Flavin-binding monooxygenase-like
          Length = 461

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +1

Query: 82  YSVSSKQVSAKMATEKTLPEIFKYVDQNKDSYKQLLKEAVAIP 210
           + V SK V+A ++   TLP + + +D  K SY+   +EA+ IP
Sbjct: 337 FEVQSKWVAAVLSGRVTLPSVDEMMDDLKLSYE--TQEALGIP 377


>At2g28260.1 68415.m03430 cyclic nucleotide-regulated ion channel,
           putative (CNGC15) similar to cyclic nucleotide and
           calmodulin-regulated ion channel (cngc6) GI:4581207 from
           [Arabidopsis thaliana]
          Length = 678

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -3

Query: 308 P*LCSSSDFLQFVLHPVNIRMQSAR-YFTSHETDGMATASFNNCL 177
           P LC+   FL     PVN  +   R +  S+ T+G  T  FN+CL
Sbjct: 489 PALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCL 533


>At2g17530.1 68415.m02028 protein kinase family protein identical to
           SRPK2 [Arabidopsis thaliana] gi|9843645|emb|CAC03676;
           contains protein kinase domain, Pfam:PF00069
          Length = 440

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 308 GCWLSNNRWQRRSTAASFSRRIG**SKKKYSLYLWSFGCTTCFEI 442
           GCW  N   +   T    +  +   S   YS+ +WSF C T FE+
Sbjct: 263 GCWADNKFAEEIQTRQYRAPEVILQSGYSYSVDMWSFAC-TAFEL 306


>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 709

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1

Query: 622 RFLHTFENELQIDRQLS 572
           RF HT +N+LQ+DR +S
Sbjct: 471 RFYHTTDNQLQLDRDIS 487


>At1g75370.1 68414.m08754 SEC14 cytosolic factor, putative /
           phosphatidylinositol transfer-like protein, putative
           similar to phosphatidylinositol transfer-like protein
           III (GI:14486705) [Lotus japonicus]; contains Pfam
           PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
           CRAL/TRIO, N-terminu
          Length = 612

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -2

Query: 375 PIRLLKLAAVERLCHL-LFESQHPLTL**LRLPSICLASSEHTDAIRTIFHIT*NGWNGY 199
           P +L+++  VER     + E +  + +   +LP+ C+A+  H D+  TI  +   G+  +
Sbjct: 187 PAKLMQVTTVERFIRYHVREFEKTVNI---KLPACCIAAKRHIDSSTTILDVQGVGFKNF 243


>At5g13210.1 68418.m01516 expressed protein
          Length = 673

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 408 YGHLDVQPALKSDGWETEPFELVERNEKLYGRGSLM 515
           Y  L   P+  S+GWET+ +E++ R  K  G G ++
Sbjct: 573 YAFLRQPPSNPSNGWETD-YEVIVRKYKQNGYGDVV 607


>At1g73080.1 68414.m08450 leucine-rich repeat transmembrane protein
            kinase, putative similar to receptor protein kinase
            GI:1389566 from [Arabidopsis thaliana]
          Length = 1123

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 616  GIWFRRLDSLLMDKLKPEGFLIVVTMYVYP--ITIGWEPRSHVSL 744
            G W R+ D L++ +  P+G L  V   V P    + W  R +V+L
Sbjct: 889  GFWLRKDDGLMLYRYMPKGSLYDVLHGVSPKENVLDWSARYNVAL 933


>At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 647

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -1

Query: 622 RFLHTFENELQIDRQLS 572
           RF H FEN+LQ+D++++
Sbjct: 429 RFYHIFENQLQMDQEIN 445


>At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 647

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -1

Query: 622 RFLHTFENELQIDRQLS 572
           RF H FEN+LQ+D++++
Sbjct: 429 RFYHIFENQLQMDQEIN 445


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,077,775
Number of Sequences: 28952
Number of extensions: 361186
Number of successful extensions: 948
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)