Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021937X
         (434 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-...    83   2e-15
UniRef50_P04435 Cluster: T-cell receptor beta chain V region CTL...    34   1.1  
UniRef50_Q4W9Q3 Cluster: Protein kinase activator Bem1, putative...    33   3.5  
UniRef50_A6FYJ7 Cluster: Putative uncharacterized protein; n=1; ...    32   4.6  
UniRef50_Q4CNH2 Cluster: Anion-transporting ATPase-like, putativ...    32   4.6  
UniRef50_A6GIB2 Cluster: Polyketide synthase; n=2; cellular orga...    32   6.0  
UniRef50_UPI00005A9609 Cluster: PREDICTED: similar to USP6 N-ter...    31   8.0  

>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=9; cellular organisms|Rep: Endonuclease and
            reverse transcriptase-like protein - Bombyx mori (Silk
            moth)
          Length = 960

 Score = 83.4 bits (197), Expect = 2e-15
 Identities = 35/45 (77%), Positives = 39/45 (86%)
 Frame = -1

Query: 434  YSPNPDHAGAGHRQRPRHVLAERSDPVTFALDAFSSNTRGRLRAP 300
            YSPNPDHAGA HR+RPRHVL + SDP+T ALD FSSNTR RLR+P
Sbjct: 901  YSPNPDHAGASHRRRPRHVLTDPSDPITLALDTFSSNTRSRLRSP 945


>UniRef50_P04435 Cluster: T-cell receptor beta chain V region
           CTL-L17 precursor; n=27; Eutheria|Rep: T-cell receptor
           beta chain V region CTL-L17 precursor - Homo sapiens
           (Human)
          Length = 133

 Score = 34.3 bits (75), Expect = 1.1
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -1

Query: 419 DHAGAGHRQRPRHVLAERSDPVTFALDAFSSNTR 318
           DHA  G  Q PRH + +R   VTF  D  S + R
Sbjct: 17  DHADTGVSQNPRHNITKRGQNVTFRCDPISEHNR 50


>UniRef50_Q4W9Q3 Cluster: Protein kinase activator Bem1, putative;
           n=7; Pezizomycotina|Rep: Protein kinase activator Bem1,
           putative - Aspergillus fumigatus (Sartorya fumigata)
          Length = 598

 Score = 32.7 bits (71), Expect = 3.5
 Identities = 28/78 (35%), Positives = 37/78 (47%)
 Frame = -1

Query: 407 AGHRQRPRHVLAERSDPVTFALDAFSSNTRGRLRAPVTVLDELDKEVDVQPPHASAR*VS 228
           AG+R +PR  L     PVT   DA S+  R  L       DE  K++   PPH S   + 
Sbjct: 377 AGNRGKPR-TLPFMPGPVTHVTDAISNGRRQNL-------DEYIKKLLAMPPHISRCQLV 428

Query: 227 RRIFSAGRDSDPVVDSFA 174
           R++F A R  D  +D  A
Sbjct: 429 RQLF-APRPGDFEIDPSA 445


>UniRef50_A6FYJ7 Cluster: Putative uncharacterized protein; n=1;
           Plesiocystis pacifica SIR-1|Rep: Putative
           uncharacterized protein - Plesiocystis pacifica SIR-1
          Length = 474

 Score = 32.3 bits (70), Expect = 4.6
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = -1

Query: 434 YSPNPDHAGAGHRQRPRHVLAERSDPVTFALDAFSSNTRGRLRAPVTVLDELDK 273
           +SP  D A A   + P   L  R  P T  LDAF S +RG+L      L+  D+
Sbjct: 281 HSPTTD-ANASRTETPSASLRSRPVPRTMPLDAFLSRSRGKLDRTGLHLERRDR 333


>UniRef50_Q4CNH2 Cluster: Anion-transporting ATPase-like, putative;
           n=2; Eukaryota|Rep: Anion-transporting ATPase-like,
           putative - Trypanosoma cruzi
          Length = 359

 Score = 32.3 bits (70), Expect = 4.6
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = -1

Query: 434 YSPNPDHAGAGHRQRPRHVLAERSDPVTFALDAFSSNTRGRLRAPVTVLDELDKEVDVQP 255
           ++  P H    +  RPR VL   +DP     DAFS    G+   PV  ++E    ++V P
Sbjct: 39  FASTPVHDAVTNTTRPRRVLLISTDPAHNLSDAFSQKF-GKTPVPVNGMEETLFAMEVDP 97


>UniRef50_A6GIB2 Cluster: Polyketide synthase; n=2; cellular
           organisms|Rep: Polyketide synthase - Plesiocystis
           pacifica SIR-1
          Length = 4457

 Score = 31.9 bits (69), Expect = 6.0
 Identities = 25/83 (30%), Positives = 34/83 (40%)
 Frame = -1

Query: 419 DHAGAGHRQRPRHVLAERSDPVTFALDAFSSNTRGRLRAPVTVLDELDKEVDVQPPHASA 240
           DHAGA  R  P  V A  S P+    +   ++TR RLR  V         +    P   A
Sbjct: 326 DHAGAARRSTPAPVSAPPSSPLGEVGEGALASTRARLRELVVA------TLGAGAPAPQA 379

Query: 239 R*VSRRIFSAGRDSDPVVDSFAK 171
              S   +  G DS  ++D  A+
Sbjct: 380 LSTSAGFYDLGLDSSDLLDLVAQ 402


>UniRef50_UPI00005A9609 Cluster: PREDICTED: similar to USP6
           N-terminal like protein (Related to the N terminus of
           tre) (RN-tre), partial; n=1; Canis lupus familiaris|Rep:
           PREDICTED: similar to USP6 N-terminal like protein
           (Related to the N terminus of tre) (RN-tre), partial -
           Canis familiaris
          Length = 386

 Score = 31.5 bits (68), Expect = 8.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 163 SNCFANESTTGSESRPAEKIRRETQRADAW 252
           S C  ++   G   R A+K+R+ET RAD W
Sbjct: 27  SPCAGDKELPGPSPREAKKLRQETWRADKW 56


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 388,651,147
Number of Sequences: 1657284
Number of extensions: 6792542
Number of successful extensions: 19743
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19740
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21496989549
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)