Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021937X
         (434 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   0.94 
SPBC1685.13 |||non classical export pathway protein |Schizosacch...    25   5.0  
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    25   5.0  
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    24   8.8  
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ...    24   8.8  
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc...    24   8.8  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    24   8.8  
SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces pombe...    24   8.8  

>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 27.5 bits (58), Expect = 0.94
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 163 SNCFANESTTGSESRPAEKIRRETQRADAW 252
           S+C  +ES    ES PA K   E    D+W
Sbjct: 299 SSCLLDESMVTGESVPARKFPLEDNSLDSW 328


>SPBC1685.13 |||non classical export pathway protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 183

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 357 WI*SFRKDVSWALTVTGSCMIRI 425
           W+ +F   V+W   +TG C I +
Sbjct: 76  WLIAFYDFVNWVFALTGGCCIAV 98


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 49  PKPFQFHQDRWASKGSAKR 105
           P+P  F+ DRWA  G A++
Sbjct: 426 PEPETFNPDRWAPNGLAEQ 444


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 196 SESRPAEKIRRETQRADAWGG 258
           SE+  AEKIRR  Q+ D + G
Sbjct: 528 SETEQAEKIRRLQQQLDRFAG 548


>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 413 AGAGHRQRPRHVLAERSDPVTFALDAFSSNTRGRLRAPV 297
           AGA H+       A   DP T  + A S + R +L+ P+
Sbjct: 171 AGASHKHGEIGCAAAIYDPTTDTVLAVSVDERSKLKNPI 209


>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
           L2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 318

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 416 HAGAGHRQRPRHVLAERSDP 357
           H G GH+QR R V  ER  P
Sbjct: 61  HQGGGHKQRIRLVDFERKVP 80


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 335 FSSNTRGRLRAPVTVLDELDKEVDVQPPHASAR 237
           ++S    R+RA  T+L +LD E   +P   + R
Sbjct: 463 YASEITARMRAAATMLSQLDAEGSRRPKAETER 495


>SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 147 SPSEALGQLLANPTPLG*AFARPPVLVKLERLRATSKL 34
           +PS     L+  PTP+  +     V +  E+ RA SKL
Sbjct: 257 APSPETKVLICGPTPMVNSLREATVALGYEKSRAISKL 294


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,477,741
Number of Sequences: 5004
Number of extensions: 24050
Number of successful extensions: 74
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)