Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021937X
         (434 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0250 + 27876358-27879261                                         28   3.8  
12_01_0672 + 5731288-5731356,5732032-5732117,5732634-5732724,573...    27   6.6  
08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614     27   6.6  
03_02_0759 + 10959028-10959135,10959238-10959807                       27   8.7  

>01_06_0250 + 27876358-27879261
          Length = 967

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -1

Query: 434 YSPNPDHAGAGHRQRPRHVLAERSDPVTFALDAFSSNTRGRL 309
           Y P+ DH   G  +R RH         +F L  + S+  G L
Sbjct: 116 YGPSSDHGSGGGARRRRHRYLVSQLVASFVLHGYYSSASGEL 157


>12_01_0672 + 5731288-5731356,5732032-5732117,5732634-5732724,
            5732886-5732935,5733339-5733408,5733508-5733617,
            5733943-5734463,5734856-5734949,5735095-5735225,
            5735241-5736274,5736383-5736457,5736615-5737104,
            5737375-5738009,5738166-5738378
          Length = 1222

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -1

Query: 422  PDHAGAGHRQRPRHVLAERSDPVTFALDAFSSNTRGRLRAPVTVLDELD 276
            PD  GAGH    + V    SD    +  A SS T G+  + + +LD  +
Sbjct: 1053 PDE-GAGHVGGAKEVKVPASDLCNHSCQANSSPTEGKKDSKIPILDSTE 1100


>08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614
          Length = 248

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -1

Query: 431 SPNPDHAGAGHRQRPRHVLAER 366
           SP+PD    G R RPR  LA R
Sbjct: 147 SPSPDAQTPGRRSRPRRCLAGR 168


>03_02_0759 + 10959028-10959135,10959238-10959807
          Length = 225

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -2

Query: 136 GARAVVSKSHPSWLSLCSPTCPG 68
           G+ AV   S PS LS CSP  PG
Sbjct: 163 GSTAVERVSPPSILSACSPAPPG 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,027,134
Number of Sequences: 37544
Number of extensions: 201917
Number of successful extensions: 540
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)